Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01662 ATGCTAAAGTGGAAGTCAGAGTCTCCTACATCACTACCTCGATTTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGTTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATTCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACAACGAAACTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAATCTAGTTCACATCGAACAGGGAACTAATGCTGCTGTAACAGAAGTCCTTGGATCATCTGGCTATAGAAACCATATAACACCCAAGAGGAGAAAAATTCAAGAAACGTTTTCCGGAAAGTTAGCTGCGGATCAAACTGCTAACACAACTGCCCAATACCTACAGGAAACTGATCGTATGGCTTCCTCGTCTTCAAATCTGTCATATTCCTTTGTTTCTGACCATGTCAACACAAGAATTTCAGGGTTTTCAAGGTCTATGTACCGAAGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCACGAGTATCTGCAAAGACTGATGCAGAAGCGGAAGGGAAAATAGATCGACAAACAAAAGCTGGGAACTCTAAAGCTTCCGTTGCTTCATCAGCTAAATCGCTACAGCAAACTAAAGATGGTCGCCAGCCCGTTTGTGTTGATCACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTTATGTGTGATGAACAGGCCAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAATCATTAAATTCTGATGGAAGCTCTGATGCTTACGGAGAGCAGGAAAGGCTTATAATGACCAAACTCTTGGATGTTCTTCGCGAACTCGTTACTCTTGGTAGCATAAAAGAAACGTGCTATTATTCGTCGACCAAGAAAGAACCCGCAGACCACGGCAATATTGGGGCTGAAACTGGCGTTGGAAGTGAAAAGAGAAATAGTAGCAATTGCATTGCAAATTACCCCATCCCATCGGTTACTAAAATATCCCAAACATTTATGCCATAA 1383 0.4071 MLKWKSESPTSLPRFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNSFRPKIASSPQEQRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYNLVHIEQGTNAAVTEVLGSSGYRNHITPKRRKIQETFSGKLAADQTANTTAQYLQETDRMASSSSNLSYSFVSDHVNTRISGFSRSMYRRSVLADVLQPQNVKNLCSLFVILSRVSAKTDAEAEGKIDRQTKAGNSKASVASSAKSLQQTKDGRQPVCVDHVNKAVADAVDIANYNRPLSPETLAFMCDEQANMFFGNTSADGAAYQNMIQKSLNSDGSSDAYGEQERLIMTKLLDVLRELVTLGSIKETCYYSSTKKEPADHGNIGAETGVGSEKRNSSNCIANYPIPSVTKISQTFMP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01662 460 MobiDBLite consensus disorder prediction 292 313 - -
Vimu10g01662 460 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 111 145 IPR005172 -
Vimu10g01662 460 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 27 62 IPR005172 -
Vimu10g01662 460 PANTHER TESMIN/TSO1-RELATED 16 399 IPR028307 -
Vimu10g01662 460 MobiDBLite consensus disorder prediction 281 314 - -
Vimu10g01662 460 SMART CXC_2 108 149 IPR033467 -
Vimu10g01662 460 SMART CXC_2 25 65 IPR033467 -
Vimu10g01662 460 MobiDBLite consensus disorder prediction 83 100 - -
Vimu10g01662 460 MobiDBLite consensus disorder prediction 82 101 - -
Vimu10g01662 460 ProSiteProfiles CRC domain profile. 26 148 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01662 Vimu-Chr10 22080492 22084253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01662 7 410 CPP Transcription Factor Family AT4G29000 49.647 6.07e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu10g01662 TCR 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01662 - K21776 gmx:100811459 679.863