Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01653 GGGCAGACACCGATAAAGGGTTCTCCATATCCAAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCAAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCTATTTTTTTGGTTACCTACACTGCTGAACAGAACCATCCAAAACCTAATAACATAGCATTCATTCCAATTCCACAAAATACAACTTCAAACATAACTAACAGCTCAAAGAACTCTAATAACGTTAAAAACTACACAACATATCATAAAATTAAATTCATCTTCCCTACTTCACATATCTTAAACACCATCAAAGAAAAATATATAACATTGCATACATTTAACAATGACATATCAAATTCTTCATCAACCCTTCATCAACAAAGTCTTCATCACTCACAAAATAGAGAACTCACCTCTACAGTAGTGACAACTCCTACGTGTATCAGCCCTCCTCGCGCAGCAAAAGCCCCTTCGTCAAATTGGCCTCGTCGCGATAACGGAAGCACTGGTCAGGCAGGCACACAACCCTCGTCAACCACCAATTTCACCTCGCAACAACCTAATCCTTCGCCTCAACCACCACCCTCCTCACCGGCACTCTCCTTCCACAACAGAAACCTAATACCTAACTATCGAACACCAATTTCACAAAAATGCGAAAGGGTGGAACGAACAATAGTGGTTAAGTTTGGGGGTTCTTTATTTCAGAGGAAAAGTTAG 711 0.4121 GQTPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAIFLVTYTAEQNHPKPNNIAFIPIPQNTTSNITNSSKNSNNVKNYTTYHKIKFIFPTSHILNTIKEKYITLHTFNNDISNSSSTLHQQSLHHSQNRELTSTVVTTPTCISPPRAAKAPSSNWPRRDNGSTGQAGTQPSSTTNFTSQQPNPSPQPPPSSPALSFHNRNLIPNYRTPISQKCERVERTIVVKFGGSLFQRKS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01653 236 MobiDBLite consensus disorder prediction 117 144 - -
Vimu10g01653 236 MobiDBLite consensus disorder prediction 158 183 - -
Vimu10g01653 236 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 119 IPR044810 GO:0003700
Vimu10g01653 236 SMART WRKY_cls 1 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01653 236 Pfam WRKY DNA -binding domain 1 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01653 236 MobiDBLite consensus disorder prediction 117 201 - -
Vimu10g01653 236 Gene3D WRKY domain 1 53 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01653 236 ProSiteProfiles WRKY domain profile. 1 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01653 236 SUPERFAMILY WRKY DNA-binding domain 1 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01653 Vimu-Chr10 21468760 21469470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01653 1 73 WRKY Transcription Factor Family AT5G52830 58.824 6.43e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g01653 WRKY 2.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01653 K13425 - gmx:102667104 94.3597