Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01650 ATGGAGCGAAGATCACATTCCACTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATACTCCGAAAGGTCACAGCAAGACATGTCAGCCATGGTCTCTGCGCTCACACAAGTCATAGGTGGTTCCAACAATGATTCTCTTCACCACCATGAAGACCCTTTTACTTCTTCCAACAACACCTCATCCCAGAATAATAATGAACAATCACAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGGAAATGGGCGGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCGGCTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCCTGAGAGGGTTCAAGGCACTGCCGAATTTGGTTACCTCACAAATCAACACCTTTCATCAACAACAGCTGCCAGTGGCCAAACTTCAAACCCTGTTACTCCACACTTCGCTCAAGAAACTTATTCACCAACTCACTATCACTATCCTCAACAAATCATGGGTGCAGCTGGAAGTAACTTCAATAACCAAGACACGCTCGGTTTCTATGGGGGAGACATGTTTGTTTCTTCTTCGTCTTCTTCCTCAGGTTTCTCTCAACAGCAAGAACAGTTTCTGAGATTTTCGACGCAGTTTGGAGGTTCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGTGATGGATATTGA 762 0.4606 MERRSHSTEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNNDSLHHHEDPFTSSNNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEFGYLTNQHLSSTTAASGQTSNPVTPHFAQETYSPTHYHYPQQIMGAAGSNFNNQDTLGFYGGDMFVSSSSSSSGFSQQQEQFLRFSTQFGGSSSEPPRNWRGDGY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01650 253 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 MobiDBLite consensus disorder prediction 22 44 - -
Vimu10g01650 253 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Vimu10g01650 253 PANTHER DNA-BINDING DOMAIN 48 215 IPR044808 GO:0003700|GO:0009873
Vimu10g01650 253 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 MobiDBLite consensus disorder prediction 1 18 - -
Vimu10g01650 253 MobiDBLite consensus disorder prediction 53 77 - -
Vimu10g01650 253 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 MobiDBLite consensus disorder prediction 1 89 - -
Vimu10g01650 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Vimu10g01650 253 MobiDBLite consensus disorder prediction 233 253 - -
Vimu10g01650 253 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Vimu10g01650 253 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01650 Vimu-Chr10 21389895 21391810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01650 15 155 AP2-EREBP Transcription Factor Family AT5G61890 66.897 5.32e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g01650 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01650 - - gmx:100799190 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01650 10 21389895 21391810 Vimu10g01650 10 21389895 21391810 ECH
Vimu11g04124 11 62901198 62901524 Vimu10g01650 10 21389895 21391810 ECH