LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01644	ATGGATCCGGACGCATTCACAGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCCGCCGCACCGCCCTCCCGGCCCCCTCCGCCGCTCCTGGACTATGGTGTCGCCTCTCCCGCTGTCGCCCAGTCTTACCACCCCGCGAGGGCGGCGCCCCGCGAGCTCGGTGGCCTCGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCTGCCAAGATCGCCGAGCTTGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGATCTCCTCGTCGGTGAACGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGTCGCATCGACGACGAGGACATCAAACGCCGCACTGGTAACCTCCTCTCCACCGACACCACCACCACCAACGCCCTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCAGTGGTGCAACGAGAGAAGGAGGCTGTGGGGAGTGGGGGAGGGAGCACGTGGGAGGTGGTTGCGTTGGAGGAGAGGAGGAAGCAGCAGAGGAGGCGGAGAACGAAGATGAAGGAGCAGGAGGAGAAGGAGGAGGTAGAGGATGAGGAGGGAGAAGAGAACGAGGAGGGTAACAACAACAGTGGTGGAGGTTGTGAGAGGCAGAGGGAGCACCCGTTCATCGTGACGGAGCCTGGGGAGGTTGCACGTGGGAAGAAGAATGGGTTGGACTATTTGTTTCACCTCTACGAGCAGTGCCGCGAGTTCTTGATGCAGGTCCAAGCCATCGCGAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAAGCTGGAGCTAGCTACATCAACAAGCCAAAGATGCGGCACTACGTCCACTGCTATGCCTTGCACTGTCTGGACGAGGAGGTGTCGAACGAGCTCCGTAGGGCGTTCAAGGAGAGAGGAGAGAACGTTGGAGCGTGGAGACAAGCATGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGACATTGATGCCATATTCAACGCCCACCCTCGTCTTTCCATTTGGTACGTTCCCACCAAGCTCCGTCAGCTTTGTCACGCCGAGAGAAACACCGCCGCCGCTTCCAGCTCCGTCTCTGTCGGCAGTGCTCACCTTCCCTTCTAG	1206	0.597	MDPDAFTASLFKWDPRTVLPAAPPSRPPPPLLDYGVASPAVAQSYHPARAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDDEDIKRRTGNLLSTDTTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVALEERRKQQRRRRTKMKEQEEKEEVEDEEGEENEEGNNNSGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTAAASSSVSVGSAHLPF	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01644	401	Pfam	Floricaula / Leafy protein SAM domain	54	130	IPR035079	-
	Vimu10g01644	401	MobiDBLite	consensus disorder prediction	154	229	-	-
	Vimu10g01644	401	Pfam	DNA Binding Domain (C-terminal) Leafy/Floricaula	222	387	IPR035209	GO:0003677
	Vimu10g01644	401	Gene3D	Protein LEAFY	224	393	IPR038276	-
	Vimu10g01644	401	PANTHER	PROTEIN LEAFY	1	400	IPR002910	GO:0003677\|GO:0006355
	Vimu10g01644	401	Coils	Coil	181	217	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g01644	1	396	Orphan Transcription Factor Family	AT5G61850	65.700	3.14e-166	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LFY	Vimu10g01644		C_LFY_FLO	7.6e-109	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01644	-		-	gsj:114416001	635.18

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g01644	10	21227037	21229202	Vimu10g01644	10	21227037	21229202	ECH