Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01636 ATGAGAAACCGAGACGCAGAAGGAAGCCATTCGCCAAAGAGCGACCGCCGGCGAGCCTTCCTCGCCGGTAATTCGCTCTTCCTCGCCGGAGTTTTCCGCAACCTCCATTTCCCCGGTCGCACCTTCGAATTGGGCATCTTAGATTGCAATGCAGAGGAAAGGAGGTTCCTGTTGCGGGGGGGAGCCTGGGATCTCTTGTTTCTGAAATTCCTGTGCTCTGGCTCATTTGAGCGATTCGGTTTTTTGTCTTTTCTCTTTGTTCTGGATGAGGAGTGTGGGGAATTTTGTGGAGCAGGGGATTTTGGAGTTTCTCTGCTAGCGAGGTTGGGGTCCAATCCAGAAGATTATGGCTTCTCTGAAATTTTGGTTTTATCTCTTGATCTGTTAATGTTTGAGGCTTTCGCTGTGAAATTCCCTCTCCATATGTGTAATTTTGTGGCAGAATATCTGGAGTCGTTGGTAGGGGTGAAGGGGGGTGGTGATGTTGAGCCTAACAAAACTAGCAAGGGAGGAGGCTTTCAGTATTTTCTGGACAGCTACAGGATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAGTATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTACAGGGCAAGAGTGAAATGGCGGCCTCACCTGGCTCTATTTTGAATACTTCATCACCCCATTCAACAAATGCAAAATCTGGCTTGCCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCCGAAGGATTCCACGGAATCCCTTAATTATACTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGCAGCAAGATTGTCACCAATGCTACCTCACGTGAAAGTAGTCTATTTTCAAGCTCCCTGTCTGAGGTGTTTAACCAAAAGATGAGGTTATTGGGGAATGGAGTGCCATCTGGTCAACCCATTAGTGTGGGATCCCTTCCTGAGGAAGAACCACATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGGGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGATGAACTTCTAATTTCTGGAAAGGGAACCAGTTTCATTTATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGACATTCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATTTAGGAAACTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAACAAATATTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCTCAATTGAATCATGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCTGGCCATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGATATAAGGGAGTTTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAGCACAGCTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACTGCAAGAGGGGCATCTACTGGAAAAGCATCTGGTATTTTTGAGGCCAGTAACACTATTGATGCTATGAAATTTGCATCTGTTTCGAGGTTCCACCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGCAGTCCTTACAACTATTCAAGTACCGTTAACATGGCTGCCAATATTGGAAATGGATCAACGGAACCATCTGAGAGCAGGCAAATTCAGGGAATAAACTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCCGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGTCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGACAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAGCGCATGAGAAACCTCTATCCTCGAAGAAACGAACCAAACACTAACAATGCAGATAAGAAACAATATGAACTTGACCTAGGTCGCATATTGCGTGGGGATGACAGCCGAACAACGCTCATGATAAAGAATATTCCTAACAAGTATACTTCGAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTTTGTATTTGCCAATTGATTTCAAGGCAAGTATTTTCCTGGAGTTGCTAAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGATAAGGAATATTGTGCAGGCCTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAGTGGTGAAGATTCAATGTTGCCTGTCATGTCAACTCCAAGACTGTATATTTACATTTTTCTTTTTGTTCGATTGGACGAGGAGTTGGAGCTGGTCGGAAAGGGAGGGGGCTCACAATTTTTTCCTATAGAGGAGCCTTGCAAAGAGTTTTTGGATGATGAGGTACATAACCAGAATGAAGCCGCCACTGGTTCTAGTGTTTTCGTTATTTTCCTAAAATTTTGCATGGAGTACTTCTACCATCTCACAAGTTTCGAGAATGGCTAA 3699 0.4247 MRNRDAEGSHSPKSDRRRAFLAGNSLFLAGVFRNLHFPGRTFELGILDCNAEERRFLLRGGAWDLLFLKFLCSGSFERFGFLSFLFVLDEECGEFCGAGDFGVSLLARLGSNPEDYGFSEILVLSLDLLMFEAFAVKFPLHMCNFVAEYLESLVGVKGGGDVEPNKTSKGGGFQYFLDSYRMPSEIMEKRGVSASSHFLDDISYASEKSIGLRKPKSIHDHFLQGKSEMAASPGSILNTSSPHSTNAKSGLPISHTTLSGEITGDLHFGREAGTIEMPKDSTESLNYTKRSWSNVHRQPASSSYGLIGSKIVTNATSRESSLFSSSLSEVFNQKMRLLGNGVPSGQPISVGSLPEEEPHKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDDELLISGKGTSFIYEDPDYFGASKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRFRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDEPDLGHSLSDNISLRYKGVSSGFIASAGSLENGYNQGFHSAAQLPAFIDNSLFNMNSNIHKTARGASTGKASGIFEASNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTVNMAANIGNGSTEPSESRQIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERMRNLYPRRNEPNTNNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIFLELLNKCNVGYAFINMIDPGQIIPFHKIRNIVQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFASGEDSMLPVMSTPRLYIYIFLFVRLDEELELVGKGGGSQFFPIEEPCKEFLDDEVHNQNEAATGSSVFVIFLKFCMEYFYHLTSFENG 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01636 1232 FunFam MEI2-like protein 5 isoform 2 441 535 - -
Vimu10g01636 1232 MobiDBLite consensus disorder prediction 1099 1147 - -
Vimu10g01636 1232 Pfam RNA recognition motif 2 974 1084 IPR007201 -
Vimu10g01636 1232 Gene3D - 446 534 IPR012677 -
Vimu10g01636 1232 FunFam Protein MEI2-like 1 536 630 - -
Vimu10g01636 1232 PANTHER RNA RECOGNITION MOTIF-CONTAINING 226 1142 - -
Vimu10g01636 1232 SMART rrm1_1 453 521 IPR000504 GO:0003723
Vimu10g01636 1232 SMART rrm1_1 538 606 IPR000504 GO:0003723
Vimu10g01636 1232 Gene3D - 535 629 IPR012677 -
Vimu10g01636 1232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 454 517 IPR000504 GO:0003723
Vimu10g01636 1232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 604 IPR000504 GO:0003723
Vimu10g01636 1232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 610 IPR000504 GO:0003723
Vimu10g01636 1232 CDD RRM3_MEI2_like 977 1076 IPR034454 -
Vimu10g01636 1232 MobiDBLite consensus disorder prediction 1130 1147 - -
Vimu10g01636 1232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 452 525 IPR000504 GO:0003723
Vimu10g01636 1232 SUPERFAMILY RNA-binding domain, RBD 449 606 IPR035979 GO:0003676
Vimu10g01636 1232 CDD RRM1_MEI2_like 451 526 IPR034453 -
Vimu10g01636 1232 SUPERFAMILY RNA-binding domain, RBD 976 1075 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01636 Vimu-Chr10 20790760 20801410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01636 447 603 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 3.24e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01636 10 20790760 20801410 Vimu10g01636 10 20790760 20801410 ECH