Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01632 ATGGATTTCTCAAAACTCAATGACTCGCCCATGTTCCGGCAACAGCTTCAGTGCATGGAAGAGAGTGCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGAGCTCGAAAGTACACGGAAGGGATTGGAGATGCATATGATGGAGATATTGCATTTGCTAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTGTTTGTAACTTTGGGAGGACCAGTTATGACCAAATTTGCTATTGCATTCAGAGAAATGGGTACACATAAGGAAGTTCTTCGGTCACAGGCGGAGCACATGCTAAATGACCGATTACTCAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGATTTGAGAAAGCTTCCATTGTCCATGATCAGGCACGTGAGAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATGTTGCTACTGTGGTAGAAGAGGAATTGCACAATGCAAGAACCTCCTTTGAGGAATCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGGTTTGAGTTTTTGGAGGCTGTCACTGGTGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGTTATTACATGAGCTGGAGCCTTTCATTGTCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTCGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCAAGAGAGCATGATGTCCTTGACTGGCCCTTACGTTTCTCCCACTAGAGATGGGAATCCGGTGCAGCCTTTTTCAAGGATATCTAATAAAGTGGCAGATGCTATAACAGAGTCTGCCGAAAATGGAAAGGTTCAAATCATTCGGCAAGGGTATCTCTCTAAACGATCCTCAAGTTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATTGTAGCAATCAACCATCCCTACACAGAAATTGTGCCACCGATAATAGTGCTGGAATTTTGAGTCGCCTTCTTTCTTCACATTACCATGGAGTCATGCCTGATGACAAATGTGTAGCCCGTCACACAGTGAACCTGCTCACTTCAACAATCAAGTCTGATGCTGAACAATCTGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGAGTTACACATTGCAGGCAGAAAATGCTGTGGATCAGATGGACTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGTACAGACACTGTCTGATGTGTCAGAAAATGGTAACGGTCACTCTGCCAACAAGCTTCTTTTGTTAAAAGGTTGTCCAGATGATGATCTAGCATTGAATGGGGATTCTATGTCGTCCGAAGACTTGCAGAAGAATAAGCAAAGTACAAAAAGTGAAAAGCCAATTGATATTCTTAGGAAAGTTAGTGGCAATGACAAATGTGCTGATTGCGGCAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATTTATCGAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCGGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCAACCATCAGGTTCTTCACAAACAGATGAGAATCCTGATGGATCATCCAAGCCGCAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTTGAATGTCTGGGAGAGAGAAGTTGATGCATGGTTTGTGTTGTTGCAGTATGATGCAAAAGTGTTTGTTTGCCGGGTAAAGAACAACGATCTCCTTTCACAACAGGTGGCAGAAAGCATCAATGCCAATGACAAGAGAGCAGTGTACCGACACATTGTGAAATCAGATGTGAATGTCAATGCTATTAGTCGTGAACCAGGCTTTTCTTGCAACATGCCTTCTTCAACTAATGATCCCAACACATCATGCGAAAACTCAACTCATGAATCAGTGGAGGACATACAAGATGGTTCTAGTGTCCTTCACCTGGCATGCCAAAATTGTGATGTTGCAATGGTAGAGCTACTCTTACAGTATGGGGCAGACGTAAATGCTAGTGATTCTCAAGGAAAGACACCACTACATTACTGCACTATGATGGGGAAGCATGCAACTGCAAAAGTGCTTATTACAAGGGGGGCGAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCTGAACCCGACACTGTTGACAAAGATACTGTTCCTCTTAACCAGGAAACGATACCCCCTCAAAACTCACCAGAAAAATGA 2439 0.4264 MDFSKLNDSPMFRQQLQCMEESAESLRSRCFKFYKGARKYTEGIGDAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFAIAFREMGTHKEVLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASIVHDQAREKFMSLRKSTKIDVATVVEEELHNARTSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIVEVLAYTQKARESYNEEQIRLCERMLEYKKHVHQESMMSLTGPYVSPTRDGNPVQPFSRISNKVADAITESAENGKVQIIRQGYLSKRSSSLRGDWKRRFFVLDSRGMLYYFRKPWNGLHCSNQPSLHRNCATDNSAGILSRLLSSHYHGVMPDDKCVARHTVNLLTSTIKSDAEQSDLRFCFRIISPSKSYTLQAENAVDQMDWMEKITGVIASLLSVQTLSDVSENGNGHSANKLLLLKGCPDDDLALNGDSMSSEDLQKNKQSTKSEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKVWDSAVLSMLQSLGNLFANSVWEELLQPSGSSQTDENPDGSSKPQKKLFHARKPSHDDPISLKERFIHAKLNVWEREVDAWFVLLQYDAKVFVCRVKNNDLLSQQVAESINANDKRAVYRHIVKSDVNVNAISREPGFSCNMPSSTNDPNTSCENSTHESVEDIQDGSSVLHLACQNCDVAMVELLLQYGADVNASDSQGKTPLHYCTMMGKHATAKVLITRGANPLAVDKEGNTPFKLAPEPDTVDKDTVPLNQETIPPQNSPEK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01632 812 SMART arf_gap_3 486 608 IPR001164 GO:0005096
Vimu10g01632 812 SUPERFAMILY Ankyrin repeat 662 788 IPR036770 -
Vimu10g01632 812 CDD BAR_SFC_plant 15 215 IPR035670 -
Vimu10g01632 812 Gene3D - 688 795 IPR036770 -
Vimu10g01632 812 MobiDBLite consensus disorder prediction 574 602 - -
Vimu10g01632 812 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 469 623 - -
Vimu10g01632 812 MobiDBLite consensus disorder prediction 586 602 - -
Vimu10g01632 812 MobiDBLite consensus disorder prediction 777 812 - -
Vimu10g01632 812 SMART PH_update 295 432 IPR001849 -
Vimu10g01632 812 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Vimu10g01632 812 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vimu10g01632 812 PANTHER CENTAURIN/ARF 2 801 IPR045258 GO:0005096
Vimu10g01632 812 Pfam Ankyrin repeats (many copies) 714 766 IPR002110 GO:0005515
Vimu10g01632 812 CDD ArfGap 489 616 - -
Vimu10g01632 812 CDD PH_ACAP 297 434 - -
Vimu10g01632 812 Pfam Putative GTPase activating protein for Arf 489 587 IPR001164 GO:0005096
Vimu10g01632 812 ProSiteProfiles Ankyrin repeat region circular profile. 745 771 - -
Vimu10g01632 812 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vimu10g01632 812 ProSiteProfiles Ankyrin repeat region circular profile. 712 743 - -
Vimu10g01632 812 ProSiteProfiles Ankyrin repeat profile. 712 744 IPR002110 GO:0005515
Vimu10g01632 812 Gene3D - 286 444 IPR011993 -
Vimu10g01632 812 Pfam PH domain 296 429 IPR001849 -
Vimu10g01632 812 Gene3D Arf GTPase activating protein 467 621 IPR038508 -
Vimu10g01632 812 SMART ANK_2a 745 774 IPR002110 GO:0005515
Vimu10g01632 812 SMART ANK_2a 712 741 IPR002110 GO:0005515
Vimu10g01632 812 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Vimu10g01632 812 SUPERFAMILY PH domain-like 203 429 - -
Vimu10g01632 812 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Vimu10g01632 812 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Vimu10g01632 812 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Vimu10g01632 812 PRINTS HIV Rev interacting protein signature 540 561 IPR001164 GO:0005096
Vimu10g01632 812 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 647 IPR001164 GO:0005096
Vimu10g01632 812 Coils Coil 118 138 - -
Vimu10g01632 812 ProSiteProfiles PH domain profile. 294 430 IPR001849 -
Vimu10g01632 812 MobiDBLite consensus disorder prediction 796 812 - -
Vimu10g01632 812 SUPERFAMILY ArfGap/RecO-like zinc finger 486 575 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01632 Vimu-Chr10 20421708 20429738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01632 490 616 C2H2 Transcription Factor Family AT4G21160 45.312 2.70e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01632 K12489 - gmx:100797073 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01632 10 20421708 20429738 Vimu10g01632 10 20421708 20429738 ECH
Vimu11g04312 11 64473219 64490481 Vimu10g01632 10 20421708 20429738 PCT