Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01623 ATGCTGTTTGCTTGCATCCAATTCAATTCCATTCGACTCCGTCCATCTATGCATCCATCCATCAAACGCTGCCCGTTAATAGCACGACAAGGTCATTTCCCAATAAAAACAGAACAACTTTCCATAGACTGTCACGACACACGCCGTTACATGCCAATCCAATCCCCTTTTGACACCGCGTTAACACCGTCTATGCCCTTCTCTGTCCCCAGCCGCCTTTATTTATGGATCCTCTTTACCCCTATGCTCGGTCACGGGCCCCACACATACTGCCAAATGCCGGTTAACTTGTTGAGTGAATTTGAGTTTATCTTTGTGTTTCTTCCTGCGAAGGCGTTGTACGATTACGCCAGGAGTGTTGCGGATGAGAGATCTGTGGTGAGGTCTGTGGAAATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTTGAACCATATCGACGGCGGAGCTGTGGAGGCTCAGGCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTCGTGACCGTGCCGCGCGAAAGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAACCAAATCAAAATGAGAATGACGTGGAGAAAGAACCGCCACCGCCCCCGCCTCCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGGCGGCATGCTGATGAATGTCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCTAAGGATCTTCATGGAAACGAATGGCGATTTAAACACATCTTTCGGGGTAATAATTCTCTCATCGTTCGCTGCCCTCCCGGTCAGCCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGTCGCCGGGGATGCGTTTATATTTCTTAGAGGTGAAAACGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTGATCTCAAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTGTATTACAAGCCTAGGACCAGTCCCGCTGAATTTATTGTTCCGTATGACCAATATATGGAGTCTCTCAAAAACAGTTATAGCATTGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATTGAAGATTCTGATCCCAACAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCACTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGTAGTTCCTTCTTCCCCAGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCGTCGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTGGGTGAAAGCAATGACTCTGATGCTGCTGAGAAATCTGTTGTTTGGCCGCCTGCCGCTGTAGATGATGAAAAGATTGATGCTTCTACGTCAAGGAGGTACGGGACGGAGAGCTGGATGTCAATGGGGAGGAACGAGCCAACATATTCTGATCTTCTTTCAAGCTTTGGGGCCGGTGGGGATCTTTCTCATTCATCCTTGATGGATCAAATGAGCCCAGTAGTTTATCCCACTAGAAAGCAATCGGCGGATCATGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGCAATGCCCTCTAGTCTTTCATTGAATGTATTGGACTCCAATACGAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCGCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCGGCACTGCATCATAAAGTAGAGCACTCACATGGAAACTTGATGCCACCTCCACCTGCACCCCTAAATCAATATCAGACTCCTTGTTCAAGAGAAGTTATGTCAAAACCAGTGTCAACAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTTCTGTACCGCAAAGAAATGTCAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCTGATGATCTAATTGTTGATGACCATGATAGACCATTACAGACTTCTCAGCTACATGCAAAAGATGGTCAAGCCAAACCCCTCAGTAGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTCGGTAGGTCAGTGGACCTTACGAAGTACACTGGCTATGATGAATTAGTGGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAGTTATTGTCAACTAAAAAGGATTGGCTTATTGTTTATACCGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCGTGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCGGGTACCTTGAGCTCAAAAAATGAAGAGAACCTGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAACGTGTGCCGCTTCAAAAGTTCAATTATGAATATTGCCTTGACGCGTGA 2952 0.4834 MLFACIQFNSIRLRPSMHPSIKRCPLIARQGHFPIKTEQLSIDCHDTRRYMPIQSPFDTALTPSMPFSVPSRLYLWILFTPMLGHGPHTYCQMPVNLLSEFEFIFVFLPAKALYDYARSVADERSVVRSVEMASSEVTMKGNCLNHIDGGAVEAQAPATAKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGNNSLIVRCPPGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPSPANGFPRVLQGQEFSTLRGNLGESNDSDAAEKSVVWPPAAVDDEKIDASTSRRYGTESWMSMGRNEPTYSDLLSSFGAGGDLSHSSLMDQMSPVVYPTRKQSADHEGKLHMPQPWPAMPSSLSLNVLDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHHKVEHSHGNLMPPPPAPLNQYQTPCSREVMSKPVSTKTFEAVKLKDGDCKLFGFSLISGPIVPEPSVPQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDLIVDDHDRPLQTSQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENLSGSEGADAKDVKRVPLQKFNYEYCLDA 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01623 983 Gene3D - 851 944 - -
Vimu10g01623 983 Pfam Auxin response factor 410 492 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu10g01623 983 ProSiteProfiles PB1 domain profile. 855 937 IPR000270 GO:0005515
Vimu10g01623 983 FunFam Auxin response factor 447 519 - -
Vimu10g01623 983 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 166 944 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu10g01623 983 SUPERFAMILY DNA-binding pseudobarrel domain 269 413 IPR015300 -
Vimu10g01623 983 Gene3D - 270 386 IPR015300 -
Vimu10g01623 983 Pfam AUX/IAA family 843 942 IPR033389 -
Vimu10g01623 983 MobiDBLite consensus disorder prediction 805 828 - -
Vimu10g01623 983 SMART B3_2 273 386 IPR003340 GO:0003677
Vimu10g01623 983 MobiDBLite consensus disorder prediction 536 558 - -
Vimu10g01623 983 Pfam B3 DNA binding domain 273 385 IPR003340 GO:0003677
Vimu10g01623 983 CDD B3_DNA 271 384 IPR003340 GO:0003677
Vimu10g01623 983 MobiDBLite consensus disorder prediction 779 828 - -
Vimu10g01623 983 FunFam Auxin response factor 850 944 - -
Vimu10g01623 983 ProSiteProfiles B3 DNA-binding domain profile. 273 386 IPR003340 GO:0003677
Vimu10g01623 983 MobiDBLite consensus disorder prediction 944 963 - -
Vimu10g01623 983 MobiDBLite consensus disorder prediction 518 566 - -
Vimu10g01623 983 FunFam Auxin response factor 271 386 - -
Vimu10g01623 983 MobiDBLite consensus disorder prediction 788 804 - -
Vimu10g01623 983 SUPERFAMILY CAD & PB1 domains 855 932 - -
Vimu10g01623 983 Gene3D - 447 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01623 Vimu-Chr10 19919256 19924041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01623 132 968 B3 DNA Binding Superfamily AT5G62000 63.688 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu10g01623 AUX_IAA 2.4e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01623 - - gmx:100803498 1501.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01623 10 19919256 19924041 Vimu10g01623 10 19919256 19924041 ECH
Vimu11g04313 11 64506200 64511585 Vimu10g01623 10 19919256 19924041 PCT
Vimu10g01623 10 19919256 19924041 Vimu7g00526 7 5448813 5450801 PCT