Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01622 GCTTCTTCTGCTGTATGTAACGTTCCTTCTCTTAAGCGAGCCATCGCAATCTCTCTCTCCAATGCCCTTTTCTTTCTGGAACCTCTTCCTCTTTTTCTCCACTCTCTTCCTTTAACTCCCTCTTCTTCTTTCTCACCTCATTTCTCTCGCAAACGCCAACAACAACCTTCCTCTTCAACCACAATCACAACCACAAAACCACCCATGATGTCAAGAATGAACACCGTTGGATGGATGGAGGAACGTGAAGACGACAACAACTCTGCTTCTTGGCCAAGAAACAAGCCCACCAACGCCATCATCACCACAGACACGACGCCCACAACAAAGCCACCAACAACAGCAGATGCTTTCGTAGAAAACAACACTACCCGCGACGACTTAGCTTCTCTCTGCGCCTTCAAGCCCATGCTGGAGCTGGACGACGAATGGTACATCAGCAACCACCACCACCACCATAACAGCCACCACCCCCAAGACATAACCTTCTCCCCCACCTTCCCCGACTCCGACAACCTCCTCCTCCTCCCCGCCGTTGACTCCTCCTCCTCCTGCTCCCCCTCCTCCTCCGTCTTTACTAACCTCGACCCTTCCTCCTCCCACCTCCACTACTTCCTCCCTCCCAAACCTCCCTCTCTATCTTCCCTCCTCAACCCCTTCGATATCTCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCCTCCGCCCATTTCCCCTCCGACACGCCTCCTCAGACCGCCACCGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTCGAAGACGGATCCTCCAAGCCTCTGTTTCACCAGCGCTCCAAGATTCTGCGGCCCCTGGAGTCCCTGCCCCCCTCCGGGGCGCCACCCACCCTCTTTCAGAAGAGGGCGGCGCTCAGGAAGAACATGTCTGCCGGTGAAGGGAGTGAAAAGAAGAGGAAGGAGAGGGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGGTTGAACTATGATTCCGATGATTTGACTGAGATTAATAACAACAGTGGTAGGGTGGATGAGGGTAGTGCTAAGAACGGTGGGAACAGTTCCAATGCCAACAGCAGCGTCACTGGGTTGGATCAGAAGGGGAAGAAAAAGGGAATGCCTGCTAAGAATTTGATGGCAGAACGACGGCGCAGGAAGAAACTCAATGATAGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCGATTCTTGGGGATGCAATCGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCTACACAACCTGGTTCTTCCCTCACTCCTTCCTCCAATTTCCATCCTTTGACGCCTACTCCTCCCACACTGCCCAGTCGTATCAAAGAAGAATTGTGCCCCAGCTCATTACCAAGCCCCAATGCTCAACCTGCTAGGGTTGAGGTTCGGCTACGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTCGGATTAGACATTCAGCAGGCTGTTATTAGCTGCTTCAATGGATTTGCTATGGACATTTTTCGAGCTGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAGTGGCATGATGTAA 1710 0.5222 ASSAVCNVPSLKRAIAISLSNALFFLEPLPLFLHSLPLTPSSSFSPHFSRKRQQQPSSSTTITTTKPPMMSRMNTVGWMEEREDDNNSASWPRNKPTNAIITTDTTPTTKPPTTADAFVENNTTRDDLASLCAFKPMLELDDEWYISNHHHHHNSHHPQDITFSPTFPDSDNLLLLPAVDSSSSCSPSSSVFTNLDPSSSHLHYFLPPKPPSLSSLLNPFDISFLDPQASSSFPLLPSAHFPSDTPPQTATATATAFAGFHSLEDGSSKPLFHQRSKILRPLESLPPSGAPPTLFQKRAALRKNMSAGEGSEKKRKEREEVVEDVSFDGSGLNYDSDDLTEINNNSGRVDEGSAKNGGNSSNANSSVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTQPGSSLTPSSNFHPLTPTPPTLPSRIKEELCPSSLPSPNAQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMM 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01622 569 Coils Coil 417 441 - -
Vimu10g01622 569 MobiDBLite consensus disorder prediction 439 453 - -
Vimu10g01622 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 427 IPR011598 GO:0046983
Vimu10g01622 569 MobiDBLite consensus disorder prediction 439 462 - -
Vimu10g01622 569 MobiDBLite consensus disorder prediction 307 325 - -
Vimu10g01622 569 SMART finulus 384 433 IPR011598 GO:0046983
Vimu10g01622 569 MobiDBLite consensus disorder prediction 304 384 - -
Vimu10g01622 569 Pfam Helix-loop-helix DNA-binding domain 385 427 IPR011598 GO:0046983
Vimu10g01622 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 381 446 IPR036638 GO:0046983
Vimu10g01622 569 MobiDBLite consensus disorder prediction 82 115 - -
Vimu10g01622 569 FunFam BHLH transcription factor 374 442 - -
Vimu10g01622 569 CDD bHLH_AtAMS_like 381 446 - -
Vimu10g01622 569 Gene3D - 372 443 IPR036638 GO:0046983
Vimu10g01622 569 MobiDBLite consensus disorder prediction 44 70 - -
Vimu10g01622 569 MobiDBLite consensus disorder prediction 336 371 - -
Vimu10g01622 569 CDD ACT_UUR-ACR-like 498 558 - -
Vimu10g01622 569 MobiDBLite consensus disorder prediction 90 115 - -
Vimu10g01622 569 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 250 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01622 Vimu-Chr10 19915248 19917806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01622 134 542 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.655 3.31e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g01622 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01622 - - gmx:100217332 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02556 7 21700626 21702035 Vimu10g01622 10 19915248 19917806 ECH
Vimu10g01622 10 19915248 19917806 Vimu10g01622 10 19915248 19917806 ECH
Vimu11g04314 11 64512363 64515203 Vimu10g01622 10 19915248 19917806 PCT