Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01619 ATGTCTAATACTCTTCCTGATTTCCAGGTTGACTCAGAATCTAATAAAGAATTGGAACAGTGGAATGAAATGCTAAAAAATGATGCAGTCAAGTTATGCTTGGAGAACAATTTTAACACAGGATTTTTCGAGGGCGGTGATAACAACACTGTTGTTGATGCATACGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCACTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCGGTTACAAATAATCTGTTCATCGGTGGAGCTTTGGCTGCAAGATCTACATACACCCTACAACACTTGGGAATTACACATATTTTATGTTTGTGTACAAATGAAATTGGCCAATCAGATTCTCAGTTTCCTGATCTATTCACATACAAAAATTTCTCTGTGTGTGACAATGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCTTGTGATTTTGTAGATTATGTTGAGAAAGCTGGTCAGAGTGTTTTAGTTCATTGCTTTGAAGGAAAAAGCAGAAGTGCCACATTGGTCCTCGCTTACCTAATGCTTAGGAAGAAATTCACTTTGTTAGAAGCATGGAATGCTCTAAAACAAGTTCATCGTCGATCTCAGCCCAACGATGGTTTTGCAAAGATCTTACTTGAGCTAGACCAGAAATTGCATGGCAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAATATGTCCCATCTGTGGCAAGAATGCTGGACTAAGTAGTAGTTCACTTAAACTCCATCTTCAGAAATCACACAAAAAGCTGTCTTCAGGGAGTGTGGATAGTGCCATGACAATGGAGATCCAGAAAGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTTAGTCCCACACAAAGGCAGTCTCATTCGATGGTTGATGGATAA 921 0.4007 MSNTLPDFQVDSESNKELEQWNEMLKNDAVKLCLENNFNTGFFEGGDNNTVVDAYELKVRLEHILERIALISEAANTERPSAVTNNLFIGGALAARSTYTLQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDNEDSNISSIFEEACDFVDYVEKAGQSVLVHCFEGKSRSATLVLAYLMLRKKFTLLEAWNALKQVHRRSQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSHSMVDG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01619 306 ProSitePatterns Tyrosine specific protein phosphatases active site. 166 176 IPR016130 GO:0016311|GO:0016791
Vimu10g01619 306 Pfam Dual specificity phosphatase, catalytic domain 93 220 IPR000340 GO:0008138|GO:0016311
Vimu10g01619 306 Gene3D Protein tyrosine phosphatase superfamily 61 234 IPR029021 -
Vimu10g01619 306 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 148 200 IPR000387 GO:0016311|GO:0016791
Vimu10g01619 306 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 79 224 IPR029021 -
Vimu10g01619 306 SMART dsp_5 79 221 IPR020422 GO:0006470|GO:0008138
Vimu10g01619 306 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 9 304 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vimu10g01619 306 ProSiteProfiles Dual specificity protein phosphatase domain profile. 79 224 IPR020422 GO:0006470|GO:0008138
Vimu10g01619 306 CDD DSP 80 217 - -
Vimu10g01619 306 FunFam Dual specificity protein phosphatase PHS1 51 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01619 Vimu-Chr10 19636819 19639027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01619 1 290 Protein tyrosine phosphatase (PTP) family AT5G23720 74.150 2.04e-154 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01619 K14165 K17614 gmx:102661225 535.028