Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01618 ATGGCAAAAGAGCAGCAAAAGCATGATCCTGGGGCATTCACCAACTCTTTGCGAACCCAAAACCAGGAATTGCAGGGTAAAGGTGAAGTGGAAAAGGAGGAGGCGGAGGCCCCTTTCACTCTCAGCGTCACCTCCAAGGTTTTGTACATGTTGGGAGACATCACAGCAGGGCCTGCGTCTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAATTATCGCACTTCTGGCTTCCCTCACCGTTCTTCCACCATGCCTTCTAGGTTCTCTACTATTTCTTCTCTTCCATATGCATTTCTACCATTTTTCATCATTGCCATTGAGCATAAGGGAAGTAGTGAAGGGGACGTGTTGGAGGACCTGGGAGAATCTATTGAGGATGTGAAAAAGGATCAGCAAACAGAAATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAGTTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACTGAACACACTAGCAGCAACGAACATTCTGAGGATGAAATGAACCGAGCACTCGAGGTAACAGTAAATTCTGGAGGGGTAGTCTTCTTTGCCTTTTTCAACTGTCGTGAGAGTGGTGATGGTTGTTCAAAAGAAGAAACAGCGGTTATAAAGATATCGTCTTCAAGAATGGCAACACAATCCGAACGTCTCGGTTATGAATTTGCCAAGTGGTTGGGAGTTCAAACTCCTCAGATTTACAGGCTTAAGAAATCAAACTATATTTCTGCCATACTCATCCATTACTTCTATTTGAAATACAAGGCTAGAGTCATCCACAATACCAGTTTAGAGTGGATACAAATAAAGGAAGCTGCTGAGAAAGCAAGAGATTCAGCAAGTTCTGCAGGTGATGCAATTGTTGAACTGACATGCACAGAACTTCTGGAAGCACTTGATCTTAGCCGATGTCTCATGTTTATGAGCTCTAGAACTTTTGAGTCACAGGAATATGCAGAACGAACATCAGCAGCCCTTGGCAGAGTACTGATGTTGGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGACTGAAAAAGTAATCTCTGCAAATGTGGATACAATAGGAGAAACCTTTAATTGTGCAGTGAACCGATATGGACCAAGGGTGAGTAGGGCACTTCAAAAAGAGAAAAGGTCAACATCAGTTGATAGTAGAATGAATTCTCATGATTCTGGTTCGATATCACAATACCCTGGTCTTTCTGACATCAAATACACATCAATACCCACTCACATGAATATGAAAAGTCAAACATCAGGAGAATCAATGCTAACTGACTTTAACATTGTGGCAATTGATTCTGGCGTACCCCGTCGACCCCCTGCTGGAAAGCGGGCAGATGACCAAGTTAATTATCCTAAGTTGGTCGAGTTACTACTGAATAGCTCTGAGTTTTCTTCTAACTTATTACATGATATAACTGGAGGGAGATTAGGATGTCCTCATCTAGAAGACACCAACACAACAACTGATGTTCACAAAGATGATGTAGCATCACTAGTTCATGAGTTCCGTAATGGTTTTCGTGCCGCTCACATGGACATGCAGGGATTCCATATATTCCTACTCACACTTCATCAAAAACTTGATAATTTGTTAAGGTTATTTATGAATGCTATAGGCAAAATATCATCAGGGGAGTCTGAAAAGGAGGATGCAGTGGTTCATGACTTACCTTCACCAGCTTTTGCTGGCAGTTGTCTTTCCCCATCTATTAAGGAGAGACATTCTAATGATATTCATCAAGATTGTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAGTAGAGATTGCTGTGACTCTGCCTCTCCTGCGTCACGAGAAGGTTGGCATGGAAAGCACCCTAAAGGAAGTGCGGAGTCACTTCGTTGTTTGCGCTTGACAACTAAGCTTCGTGACTTACATAAATTTGCCAAGGTTGGTCTCTAG 2040 0.4289 MAKEQQKHDPGAFTNSLRTQNQELQGKGEVEKEEAEAPFTLSVTSKVLYMLGDITAGPASMFAQWLQLVRKRTSNYRTSGFPHRSSTMPSRFSTISSLPYAFLPFFIIAIEHKGSSEGDVLEDLGESIEDVKKDQQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEMNRALEVTVNSGGVVFFAFFNCRESGDGCSKEETAVIKISSSRMATQSERLGYEFAKWLGVQTPQIYRLKKSNYISAILIHYFYLKYKARVIHNTSLEWIQIKEAAEKARDSASSAGDAIVELTCTELLEALDLSRCLMFMSSRTFESQEYAERTSAALGRVLMLDLVIRNEDRLPCRQLRWRGNSANLLLTEKVISANVDTIGETFNCAVNRYGPRVSRALQKEKRSTSVDSRMNSHDSGSISQYPGLSDIKYTSIPTHMNMKSQTSGESMLTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPHLEDTNTTTDVHKDDVASLVHEFRNGFRAAHMDMQGFHIFLLTLHQKLDNLLRLFMNAIGKISSGESEKEDAVVHDLPSPAFAGSCLSPSIKERHSNDIHQDCSDSESQRTAPRASSSSGSRDCCDSASPASREGWHGKHPKGSAESLRCLRLTTKLRDLHKFAKVGL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01618 679 Gene3D - 320 428 IPR036940 -
Vimu10g01618 679 Pfam Actin-fragmin kinase, catalytic 269 466 IPR015275 -
Vimu10g01618 679 Pfam Actin-fragmin kinase, catalytic 138 251 IPR015275 -
Vimu10g01618 679 MobiDBLite consensus disorder prediction 1 36 - -
Vimu10g01618 679 MobiDBLite consensus disorder prediction 619 637 - -
Vimu10g01618 679 MobiDBLite consensus disorder prediction 608 654 - -
Vimu10g01618 679 SUPERFAMILY Protein kinase-like (PK-like) 65 479 IPR011009 -
Vimu10g01618 679 MobiDBLite consensus disorder prediction 9 24 - -
Vimu10g01618 679 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 269 677 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vimu10g01618 679 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01618 Vimu-Chr10 19632458 19636339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01618 33 677 Protein tyrosine phosphatase (PTP) family AT5G23720 50.901 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01618 K14165 - gmx:102661225 898.656