Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01611 ATGGCAGCTTTTTCATACCAGTACCATCCTTTTCTGGTTGATCCTGCATTCTTCCCCAGCAACATGAACACCCCTTCTTCTCCTCCTCCTCCCCAGTTTCACCTCCCTCAGGAAACATCTTTTAATGTCACAAACCAGGAGACAAGCTGTGTTGACCAAAGCTCCAAAATCTCCATCAGTGACAATGAGCCTTCGGTCACAAAAAACCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAACCGGTGAACAGGTCACGCAGAAGGATACTGCAACAGAAGGAAGAACCAAGAAACAAAGGAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGAAGAGAAGAAGGATCAAGGAAAATGCCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCGGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGCTGCAACGGCTCGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTATCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGTCAACGGACCTCGATACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACTACCATGTGTGTCACATTGCAACAGCCCCAACCAAGCTACACCTTTTGCTGATACAACCACCATGACCCCCACCAACATTTTTTACAATGCCAGTGACTATCTTTTGGATAATTCAGCTTCATTTTTTCTTCAAGGCCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTGA 960 0.4594 MAAFSYQYHPFLVDPAFFPSNMNTPSSPPPPQFHLPQETSFNVTNQETSCVDQSSKISISDNEPSVTKNLSPQSSVVVDKLETGEQVTQKDTATEGRTKKQRKNNGGVKEEDKAKEEKKDQGKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLSTDLDTLLVRPEKLNSMASPSPLPCVSHCNSPNQATPFADTTTMTPTNIFYNASDYLLDNSASFFLQGQRSTMFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01611 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Vimu10g01611 319 MobiDBLite consensus disorder prediction 36 91 - -
Vimu10g01611 319 CDD bHLH_AtBPE_like 131 216 - -
Vimu10g01611 319 SMART finulus 147 197 IPR011598 GO:0046983
Vimu10g01611 319 MobiDBLite consensus disorder prediction 92 125 - -
Vimu10g01611 319 MobiDBLite consensus disorder prediction 22 133 - -
Vimu10g01611 319 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 29 243 IPR024097 GO:0006355
Vimu10g01611 319 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Vimu10g01611 319 FunFam Basic helix-loop-helix transcription factor 138 210 - -
Vimu10g01611 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 208 IPR036638 GO:0046983
Vimu10g01611 319 Gene3D - 138 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01611 Vimu-Chr10 19120180 19122197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01611 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.206 4.63e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g01611 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01611 - - gmx:100806696 531.561