Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01607 ATGGCCATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTTAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCGAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTGGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGCCAAGGGGTCAAGTTCACTGAACCTCAGGTACCACAATTTTAA 306 0.4542 MAIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVPQF 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01607 101 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
Vimu10g01607 101 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Vimu10g01607 101 Pfam Protein kinase domain 2 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01607 101 PANTHER CELL DIVISION PROTEIN KINASE 3 97 - -
Vimu10g01607 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01607 101 FunFam probable serine/threonine-protein kinase At1g54610 1 79 - -
Vimu10g01607 101 SUPERFAMILY Protein kinase-like (PK-like) 3 98 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01607 Vimu-Chr10 18737005 18740836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01607 3 98 Core Cell Cycle Gene Families AT5G10270 45.946 4.28e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu10g01607 Pkinase 6.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01607 K08819 - gmx:100793033 191.815