Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01605 ATGCCTTTCAACAAAACCCTTTTTCCTCAACGCTGCGAAGCAAAGGGAAAAACAGCGAAGATGAAAGATTCAGCGGAAACAGATCCTATTGCTGAGTCTCTCAACCTACTGCGTAAACTCCTGGACTCGGAACTACCCAGCGTCACAAACTTCAAAGGGAAATGGTCACTTGCCCGAGTCAAACTCACCCATCTCCAAACTCATCTCACCGATTTCTCCGCCGAGTTCCCCTACGCCTCAACCACCAACCCCCTCTCCCTCCACCTCCTCCACTCGATCTCACGCACACTCAACGACGCCGTTTTACTCGCCCGCACGTGCCAGCCCCAAGACCTCCTTAACGGCAAGCTCAAAACCCAAAGCGACCTCGACTCCCTCCTGGCCACCCTCGACCGCCAAGTCACCGACTGCGACATCCTCTTCCGCAGCGGCCTTCTCATTGAAAGCGCTGCCGTTTCCACCTCCAAAAGAGAAGCTATCCGCTCCGCATCACGAAACCTAATTACCCGGTTGCAAATCGGGTCGCCCGAGTCCAAAACTTCCGCGATGGACTCTCTATTGGACCTCCTTAATGAAGACGACAAAAATGTTACCATTGCTGTGGCCCAGGGCGTCGTTCCCGTGCTCGTGCGCCTACTCGATTCACCCTCCGACATGAAGGAGAAAATAGTCGCCGCCATCTCCAAAGTATCCACAGTCGAAAGTGCCAAGACTGTGCTCCTCGCAGAGGGTTTACTTCTTCTCAACCACCTCCTCCGAGTACTGGATTCTGGAAGCGGATTCGCGATTGAGAAATCAAGCATCGCCCTTCAAGCACTGAGTCTTACCAAGGACAACGCCAGAGCGATTGGCTCACGCGGCGGAATCTCGTCTCTGCTGGAGATTTGCCAGGCTGGCACCCCTGGCGCGCAGGCCTCCGCAGCCGCCGTGTTGCGCAACCTCGCTGCGTTCGCGGAAATTAGGGACAATTTCGCGGAGGAGAATGCAGTGGTGGTTTTAGTCGCCTTGGCTTCCTCCGGGACTGCTTCGGCGCGTGAGAACGCAATTGGGTGTTTGTCGAATTTGATTTCCGAGGCTGACTCGGATGGTTTGTCGAATTTGAGGGTTATGGTGGTTAAAGAAGGGGGGATTGAGTGTTTGAAGAATTACTGGGATTCGGGTACACCAATTACGAGTCTTGAAGTTGCAGTGACGATGTTGCGGCATTTGGCTGAGAGTGCTGCAATTGGAGAGGTGCTGATAGGTGAAGGGTTTGTTCGGAGGCTTGTGGGGGTGCTGAACTGTGAGGTGCTGGCGATGAGGGTTGCCGCCGCGAGGGCGGTTCACGCTATAGGGTTGAACAGTGGCAGGGCAAGGAAGGAGATGGGCGAATTGGGGTGCGTTTTTACTTTGATTAAGATGTTGGATGGCAAAGGTGTTGAGGAGAAAGAGGTTTCTGCAATGGCATTGTCGGTACTGCTGATGCACCCTGCGAATAGGAGGGTTTTCCGCAAGGATGAAAGAGGGGTTGTTAGCGCTGTTCATTTGTTGAACCCTTCCTTGCAAGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTCGTTAGTGTATTCCAAGAGTTGCAGAAAGCAGATGGTAGCAGCAGGGGCTTGTGTATATATGCAGAAGCTTGTGGAGATGGATGTGCCGGGATCAAAGAAACTCTTGGAGAGTCTTGGGCGTGGTAAGATTTGGGGTGTTTTTTCTAGACCCTAG 1737 0.5302 MPFNKTLFPQRCEAKGKTAKMKDSAETDPIAESLNLLRKLLDSELPSVTNFKGKWSLARVKLTHLQTHLTDFSAEFPYASTTNPLSLHLLHSISRTLNDAVLLARTCQPQDLLNGKLKTQSDLDSLLATLDRQVTDCDILFRSGLLIESAAVSTSKREAIRSASRNLITRLQIGSPESKTSAMDSLLDLLNEDDKNVTIAVAQGVVPVLVRLLDSPSDMKEKIVAAISKVSTVESAKTVLLAEGLLLLNHLLRVLDSGSGFAIEKSSIALQALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFAEIRDNFAEENAVVVLVALASSGTASARENAIGCLSNLISEADSDGLSNLRVMVVKEGGIECLKNYWDSGTPITSLEVAVTMLRHLAESAAIGEVLIGEGFVRRLVGVLNCEVLAMRVAAARAVHAIGLNSGRARKEMGELGCVFTLIKMLDGKGVEEKEVSAMALSVLLMHPANRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLASLVYSKSCRKQMVAAGACVYMQKLVEMDVPGSKKLLESLGRGKIWGVFSRP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01605 578 Gene3D - 433 566 IPR011989 -
Vimu10g01605 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 204 245 IPR000225 GO:0005515
Vimu10g01605 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 30 576 - -
Vimu10g01605 578 SUPERFAMILY ARM repeat 166 502 IPR016024 -
Vimu10g01605 578 SMART arm_5 317 357 IPR000225 GO:0005515
Vimu10g01605 578 SMART arm_5 447 488 IPR000225 GO:0005515
Vimu10g01605 578 SMART arm_5 276 316 IPR000225 GO:0005515
Vimu10g01605 578 SMART arm_5 193 232 IPR000225 GO:0005515
Vimu10g01605 578 Gene3D - 145 432 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01605 Vimu-Chr10 18670760 18674120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01605 162 341 U-box Gene Family AT1G23030 28.177 1.15e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01605 - - vum:124844092 1018.45