Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01586 ATGTTGGACGTATCTGAAAGGGTAGATGACCCAAAAATGGTGGCCCTTTTCTGCCATAGGCCCAAGAAGAAAACTTCTCCTATCTTAAATCCTCTGTACCACATAATGGCCATTGCAGCAACCTCTACCTTCTCTCTTCTCTTCTTTCTTCTTAATCTATTCCTCCAAGGCACTTTTGGCGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTCTACGGTGGGGGAGATGCCTCAGGCACAATGGGAGGGGCTTGTGGTTATGGCAATTTGTACAGCCAAGGTTATGGTACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGTGGGTCTTGCTATGAGATGAAATGTGACAGTGACCCCAGATGGTGCCTCCCCGGTAGCATAATAGTCACTGCCACAAACTTCTGCCCTCCTAACTTTGCATTGGCTAATAACAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTCGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTCCCTGTATCCTTCAGAAGAGTCTCCTGTGTGAAGAAAGGAGGAATCAGGTTTACCATCAATGGCCACTCATACTTCAACTTGGTTCTGATCACAAATGTTGGTGGAGCCGGTGATGTTCATTCTGTGTCCATAAAGGGGTCTAAGACTGGTTGGCAAACCATGTCTAGAAACTGGGGGCAGAATTGGCAAAGCAACTCTTACTTAAATGGTCAAAGCCTCTCTTTTCAAGTGACTGCAAGTGATGGTAGAACTCTCACCAGCAACAACATTGTGCCTGCTAACTGGCAATTTGGTCAAACATTTGAAGGGCAACAGTTTTAG 867 0.4602 MLDVSERVDDPKMVALFCHRPKKKTSPILNPLYHIMAIAATSTFSLLFFLLNLFLQGTFGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDSDPRWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTLTSNNIVPANWQFGQTFEGQQF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01586 288 Gene3D - 56 191 IPR036908 -
Vimu10g01586 288 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 196 IPR007112 -
Vimu10g01586 288 Pfam Lytic transglycolase 101 186 IPR009009 -
Vimu10g01586 288 SMART dpbb_1 101 186 IPR007112 -
Vimu10g01586 288 SUPERFAMILY PHL pollen allergen 193 285 IPR036749 -
Vimu10g01586 288 CDD DPBB_EXPA_N 70 191 - -
Vimu10g01586 288 Pfam Expansin C-terminal domain 197 274 IPR007117 -
Vimu10g01586 288 PANTHER EXPANSIN-A15 45 288 IPR002963 GO:0009664
Vimu10g01586 288 FunFam Expansin 196 288 - -
Vimu10g01586 288 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 195 207 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 123 134 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 154 171 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 171 184 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 96 110 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576
Vimu10g01586 288 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vimu10g01586 288 SUPERFAMILY Barwin-like endoglucanases 65 214 IPR036908 -
Vimu10g01586 288 Gene3D - 195 288 IPR036749 -
Vimu10g01586 288 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 285 IPR007117 -
Vimu10g01586 288 FunFam Expansin 56 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01586 Vimu-Chr10 17911677 17913431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01586 44 288 Expansin Gene Family AT2G40610 82.114 1.38e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01586 K20628 - gmx:547673 489.574