Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01585 ATGTCGTTCCCTCACCACCGTCGAACCCAATCGGAGATGCATTTCCGGATCACCGACGACTTCGACCTCGAGGTCGATCTCTCTCCTCCGCATTTCCAAGATCCCACCCCGCCCAACCAATCCGGACCCAAACCCGAATCTCCGCCGCACGAGACCGCCTGCTCGGGTCACCGGAGAAGTAATTCCGCGGACACCTCTTCCTCCTCTCTGCTCGAAGGCATTGAGGCCAAGAAGGCCTTGTCCCCCGATAAGCTCGCCGAACTCTGGACCGTTGATCCAAAACGTGCCAAGAGGATTCTCGCTAACCGTCAATCCGCGGCGCGCTCCAAAGAGAGGAAAGCTTGTTACGTGTCGGAGCTTGAAAGGAAATTTCAATCCCTTCAAACGGAAGCAACTACTCTCTCTGCTCAATTAAGTCTTTTCCAGTGTGTGCGTTTGTTTGGGGATACAGCTCAGTTAAAACACTTCCTCTATACAGTTCAATTCATATTTGCTATGGTTAATATCCCACATTTAGTTGCATCCATGACACATAACTCACTTCGTGCGGCTGCTTTCTCAATGTCAGGCATGAATAGTAACTTACCCCATAGAGATACAACTGGTCTGAGTTCTGAAAATACGGAGTTGAAGCTTAGGTTACAAGCCATGGAACAACAAGCTAAGTTGTGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTCGATAGGCTGCGGATTGCAACAGGAGAGATAGCAATGCCCGCTGATAATTATGGCTTGGGAATGCATCAGCTTACATATTCTCAAGGACGGTTCTTCTCACATCATTCACAACATGGGCAGAGTGCATTTCAGGCCACGCAAACGCCGCAGATGCATTCACTCTCATCTAATGTGGCTACTTACAATGAGCCTCTGTTTGATCTAGACATTCCCTATGATATGTCCGAAATGTTGTCGAATGAATCTATCGGGCAGTTTCAGGGGCTGGACATAGGCAACGGGGTTTCTCAGGTTCTGATGCCAGACTATTCCTCCAACTTCTGTTAA 1032 0.4845 MSFPHHRRTQSEMHFRITDDFDLEVDLSPPHFQDPTPPNQSGPKPESPPHETACSGHRRSNSADTSSSSLLEGIEAKKALSPDKLAELWTVDPKRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATTLSAQLSLFQCVRLFGDTAQLKHFLYTVQFIFAMVNIPHLVASMTHNSLRAAAFSMSGMNSNLPHRDTTGLSSENTELKLRLQAMEQQAKLCDALNEALKKEVDRLRIATGEIAMPADNYGLGMHQLTYSQGRFFSHHSQHGQSAFQATQTPQMHSLSSNVATYNEPLFDLDIPYDMSEMLSNESIGQFQGLDIGNGVSQVLMPDYSSNFC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01585 343 MobiDBLite consensus disorder prediction 7 27 - -
Vimu10g01585 343 Coils Coil 117 137 - -
Vimu10g01585 343 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 289 - -
Vimu10g01585 343 SUPERFAMILY Leucine zipper domain 94 142 IPR046347 GO:0003700|GO:0006355
Vimu10g01585 343 Coils Coil 214 234 - -
Vimu10g01585 343 Pfam bZIP transcription factor 94 139 IPR004827 GO:0003700|GO:0006355
Vimu10g01585 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 92 142 IPR004827 GO:0003700|GO:0006355
Vimu10g01585 343 MobiDBLite consensus disorder prediction 54 68 - -
Vimu10g01585 343 MobiDBLite consensus disorder prediction 1 68 - -
Vimu10g01585 343 MobiDBLite consensus disorder prediction 31 45 - -
Vimu10g01585 343 Gene3D - 93 144 - -
Vimu10g01585 343 FunFam probable transcription factor PosF21 93 145 - -
Vimu10g01585 343 CDD bZIP_plant_RF2 95 142 IPR044759 GO:0003700|GO:0006355
Vimu10g01585 343 SMART brlzneu 90 159 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01585 Vimu-Chr10 17901773 17904174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01585 4 326 bZIP Transcription Factor Family AT2G40620 41.067 4.14e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g01585 bZIP_1 8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01585 - - gmx:100807712 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01585 10 17901773 17904174 Vimu10g01585 10 17901773 17904174 ECH