Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01583 ATGGCTCTTCATCACCGCTTTTTGCTCGACAAAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGGCTTTCACAGGAGATGCAAATTTTGACACCAATATGGTGATTATCTTGGCTGCGCTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTGAGATGTAGCCGCAGGTTTGCTTTCGAGACCCCAGAAGAGACTGCCGCACGTTTGGTGGCAAAAGGCTTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCTGGTAGTGTCGGTATTGCAGCCACAGATTGTCCGATTTGCCTTGGGGAGTTTCTGGATGGGGAGAAAGTAAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGCAATCTTTGCTTGAGCAACCCACCATTTCTGGAGCAGTTGCTGCAGGAAATAGTAACTATGCCGGGAATGCTTCTGCAGGACAGGAACATGTGTCTTTAGCAGTGGCTGTGGAAGAGGTTGGTTAA 537 0.4674 MALHHRFLLDKNSSTPAPSNVNRTREAFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFLDGEKVRVLPKCNHGFHVRQSLLEQPTISGAVAAGNSNYAGNASAGQEHVSLAVAVEEVG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01583 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 142 IPR013083 -
Vimu10g01583 178 PANTHER RING-H2 FINGER PROTEIN ATL78 13 137 IPR044602 GO:0016567|GO:0016740
Vimu10g01583 178 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g01583 178 Pfam RING-like zinc finger 110 136 IPR001841 -
Vimu10g01583 178 SUPERFAMILY RING/U-box 110 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01583 Vimu-Chr10 17873518 17874102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01583 6 137 C3H Transcription Factor Family AT3G10910 57.857 2.56e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01583 - K19040 gmx:100787273 266.544