Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01571 ATGGAACATTGTTTGAATAAGGGTTTGAAGTCTCATGAAGGTGAATGTTCAAATTCTGATAAGGTAGTGTTGATAGATTTCATGAAGATGTTAAAGAATGATGATAGTATTCAAGATCCATCAAAGAATGAGAGAATCGATTCATCTATTGCTTACACTAAAGATGGTGTGAAAGAAGGAAAGACCTTTTGTTGCCACTATTGTAAGAAAGAGTTTTCTAGCTCACAAGCTTTGGGAGGACACCAAAACGCACACAAACAAGAACGGGCTATGACAAAACTTGTTGAAGGTTTTAATCCTTATTACTCTTATTATTCAAATTTGTATAACTCTCATCATTCTCTTTACGGAGGGTCTCTTGATAGAGCACTTGGGGTTAGAAAAGATTCCATGATTCAGAAGCTTCCTTGGACTCCAAGATATGAATATTCATTGTTTAAAAGGGATCATGGAACGTCAATATTTGATGGGTTCGAAATCATGAAGAGTGATCACAGTGATAAAACCATTCTTCAACCACTTCCTCTTTTTACAAATGATGCTAATACTTCATCAATCAAACTTCGAAAGAAGACAATGGTTATATCAACAAATGTTGATCATTCTGCTCAAGAACAAACTTCCAATGAAACATCATGCAATCTTGATTTGTCCCTCCGTCTCTAG 666 0.3529 MEHCLNKGLKSHEGECSNSDKVVLIDFMKMLKNDDSIQDPSKNERIDSSIAYTKDGVKEGKTFCCHYCKKEFSSSQALGGHQNAHKQERAMTKLVEGFNPYYSYYSNLYNSHHSLYGGSLDRALGVRKDSMIQKLPWTPRYEYSLFKRDHGTSIFDGFEIMKSDHSDKTILQPLPLFTNDANTSSIKLRKKTMVISTNVDHSAQEQTSNETSCNLDLSLRL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01571 221 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 221 IPR044246 GO:0009788
Vimu10g01571 221 ProSitePatterns Zinc finger C2H2 type domain signature. 64 85 IPR013087 -
Vimu10g01571 221 Gene3D Classic Zinc Finger 39 97 - -
Vimu10g01571 221 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Vimu10g01571 221 Pfam C2H2-type zinc finger 63 87 - -
Vimu10g01571 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01571 Vimu-Chr10 17716523 17717188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01571 34 146 C2H2 Transcription Factor Family AT5G01860 37.190 1.16e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu10g01571 zf-C2H2_6 6.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01571 - - var:108320958 314.694