Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01569 ATGGAAAGCCAGAGAGAGACACTACAGAGAGAGAAAAAACAGAGAGAGAGTGAGAGACGTTACTTTGACGCCGGTGAGGAACTTCCGCTCACACTAGCCGGAAAATCTATTTTCCGTTTCTTGTTTGTTACTCTTCAGCTGAACTACATATGCTCCGTTCCCACATTTCACTGTTTCTGGATCGAGTCTTCTGCTACACTGGCTGCTGATTTTTTCATCAGCCCTGCTTTGTTTCACTTTGAAGATCTTCTAGAGGAAAAAAGTACCTTACTTGCGAAGTGGGGTTTAGGATTCGGTGTGCAGTCTTCATCTTCATTAGAGCTTAATCTGAAGTTGGGATTTGGGATTTGGTTGTTTTATCCAATTTCGGAGGCTTTGGCCCTCTTTACTTGTTTTCCCCAGCTCAATTTCACATGGGTGGTTTGTGTGGCGGTGACGGCGGTGAACCCCTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCTGACTTACGAGATCCGAAGGGGAGGCTTGCGTCTTGGAGCGAGGACGATGAGAGTGCTTGTGGGAGTGGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGGGTGGTGGAGGTTAACCTTGATGGGTTTTCTCTCTCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGGATAAACTCCAACATTGCTCAAATAGATAGCCTTAGGGTCATCGATTTGAGTGGCAACAGTCTCTCAGGGGAGGTGTCTGAGGATGTATTCCGACAATGTGGGTCTCTCAGGGCTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGTCCATTCCCTCTACTTTAGGTGCGTGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCTGGGATTTGGTCTTTGAGTGCTCTTAGGTCCCTGGATTTGTCTGATAACTTGTTGGAGGGAGAGATTCCTAAGGGGGTTGAGGCCATGAAAAATTTAAGGACTGTTAGCTTGGCTAGGAATCGGTTGACTGGGAATGTTCCTGGTGGGTTTGGGAGCTGTTCGCTTTTGAGGTCCATTGATTTGGGGAATAATTCATTTTCTGGGAGTATTCCTGGTGATTTCAAGGAACTTGCATTGTGTGGTTACCTTAGTTTACGAGGGAATGCTTTTTCTGGAGAGCTTCCTGAGTGGATTGGGGAGATGAGAGGTCTTGAGACGTTGGACCTTTCAAACAATGCACTCACTGGTCGGATTCCAAACTCTGTTGGAAATCTTCAGTCATTGAAGATGTTGAATTTTTCTGTGAATAGTTTCACTGGTAGTCTGCCTGAGTCTATGGCTAATTGCATGAAACTTTTGGTGTTGGATGTCAGCCGAAATTCGATGTCCGGGGGGCTTCCATTGTGGATTTTCAAGTCTGATTTGGACAAGGTTTTACTGTCGGAAAATGGAACAAGTGGTAGCAAGAAAAGCCCTTTGATTTCCTTGGCCGAAGTTGCTGTTCAAAGTCTTGAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACATCTGCTATTGGAGGTTTAAGCAGCTTGCATGTTTTGAATTTAGCAAATAACTCTCTTACGGGTCCTATACCAGCTGTAATTGGTGAGTTGAAAACATGTTCTAGTCTTGACTTGAGCTATAATAAGCTAAATGGAAGTATACCTTGGCAAATAGGAGGAGCTGTGTCATTGAAAGAACTGGTGCTGAAAAAGAACTTCCTAAATGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACCACACTGACCCTGTCCCAAAACTGGCTGAGTGGCCCTATACCTGCAGCAGTGGCAAAACTTACCAACCTGCAAACTGTGGACTTATCTTATAACAACCTTACTGGAAACCTTCCTAAGCAACTGGCCAACCTTCCCAATCTTCTTTCCTTCAATTTATCTCACAACAACCTGCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCCACCTCTGTTTCTGGCAATCCATCACTTTGTGGCGCAGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCAAACACTTCTACTGACGTTAGCCCAGGTGCATTGCCTCAAACTTTGGGTCACAAAAGAATCATTCTCAGCATTTCGGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTTCGAGTGCGCTCCTCCACATCTCGAGATGCAGCTGCCCTCACATTTTCTGCAGGAGATGAATACAGCCGTTCCCCTACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCTGGTGAGCCTGATTTCAGTTCTGGTGCGCATGCTTTGCTCAATAAGGATTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTTAGAGATGGTCATTCAGTTGCAATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAGTTAGGAAAAATCAGACACCAAAACCTCGTGGAACTTGAGGGTTATTATTGGACACCATCGCTGCAGCTTCTTATATATGAGTACGTCTCTGGTGGTAGCCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGATTTAATGTGATTCTGGGAACCGCCAAGGCCTTGGCACACTTGCACAATTCCAACATCATTCACTATAACATCAAGTCAACCAATGTCCTTCTCGACAGTTATGGTGAACCAAAGATAGGAGACTTTGGCCTAGCAAGGCTGCTACCTATGCTTGACCGATATGTCTTGAGCAGCAAAATCCAGAGTGCGCTCGGCTACATGGCACCGGAGTTTGCCTGCAAAACAGTGAAGATCACCGAGAAGTGTGATGTATACGGGTTTGGTATCCTGGTATTGGAGATTGTTACAGGGAAGAGGCCAGTGGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGCACTTTGGAAGAAGGTAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAATTCCCAGCAGAAGAAGCCATTCCTGTAATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGGTGTCCCTCTGAAGGGCAAGAAGAATTGGGATGA 3297 0.4559 MESQRETLQREKKQRESERRYFDAGEELPLTLAGKSIFRFLFVTLQLNYICSVPTFHCFWIESSATLAADFFISPALFHFEDLLEEKSTLLAKWGLGFGVQSSSSLELNLKLGFGIWLFYPISEALALFTCFPQLNFTWVVCVAVTAVNPSLNDDVLGLIVFKADLRDPKGRLASWSEDDESACGSGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINSNIAQIDSLRVIDLSGNSLSGEVSEDVFRQCGSLRAVSLARNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGIWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRTVSLARNRLTGNVPGGFGSCSLLRSIDLGNNSFSGSIPGDFKELALCGYLSLRGNAFSGELPEWIGEMRGLETLDLSNNALTGRIPNSVGNLQSLKMLNFSVNSFTGSLPESMANCMKLLVLDVSRNSMSGGLPLWIFKSDLDKVLLSENGTSGSKKSPLISLAEVAVQSLEVLDLSHNAFSGEITSAIGGLSSLHVLNLANNSLTGPIPAVIGELKTCSSLDLSYNKLNGSIPWQIGGAVSLKELVLKKNFLNGKIPTSIENCSLLTTLTLSQNWLSGPIPAAVAKLTNLQTVDLSYNNLTGNLPKQLANLPNLLSFNLSHNNLQGELPAGGFFNTISPTSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDVSPGALPQTLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHNSNIIHYNIKSTNVLLDSYGEPKIGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGTLEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01569 1098 ProSitePatterns Protein kinases ATP-binding region signature. 821 844 IPR017441 GO:0005524
Vimu10g01569 1098 Pfam Leucine Rich repeat 634 649 IPR001611 GO:0005515
Vimu10g01569 1098 Gene3D Transferase(Phosphotransferase) domain 1 892 1096 - -
Vimu10g01569 1098 Pfam Leucine rich repeat N-terminal domain 153 194 IPR013210 -
Vimu10g01569 1098 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 809 891 - -
Vimu10g01569 1098 SUPERFAMILY L domain-like 248 496 - -
Vimu10g01569 1098 Gene3D Ribonuclease Inhibitor 414 707 IPR032675 -
Vimu10g01569 1098 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Vimu10g01569 1098 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Vimu10g01569 1098 Pfam Leucine rich repeat 344 402 IPR001611 GO:0005515
Vimu10g01569 1098 Pfam Leucine rich repeat 272 331 IPR001611 GO:0005515
Vimu10g01569 1098 Pfam Protein tyrosine and serine/threonine kinase 817 1083 IPR001245 GO:0004672|GO:0006468
Vimu10g01569 1098 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 434 708 - -
Vimu10g01569 1098 ProSiteProfiles Protein kinase domain profile. 815 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01569 1098 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 449 1085 - -
Vimu10g01569 1098 SMART LRR_typ_2 514 537 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 414 438 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 658 682 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 634 657 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 342 365 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 318 341 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 245 269 IPR003591 -
Vimu10g01569 1098 SMART LRR_typ_2 538 562 IPR003591 -
Vimu10g01569 1098 SUPERFAMILY L domain-like 383 731 - -
Vimu10g01569 1098 PRINTS Leucine-rich repeat signature 634 647 - -
Vimu10g01569 1098 PRINTS Leucine-rich repeat signature 417 430 - -
Vimu10g01569 1098 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 153 433 - -
Vimu10g01569 1098 Gene3D Ribonuclease Inhibitor 153 313 IPR032675 -
Vimu10g01569 1098 Gene3D Ribonuclease Inhibitor 314 409 IPR032675 -
Vimu10g01569 1098 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 892 1093 - -
Vimu10g01569 1098 CDD STKc_IRAK 821 1087 - -
Vimu10g01569 1098 SUPERFAMILY Protein kinase-like (PK-like) 818 1088 IPR011009 -
Vimu10g01569 1098 Gene3D Phosphorylase Kinase; domain 1 809 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01569 Vimu-Chr10 17666019 17670526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01569 132 1098 Receptor kinase-like Gene Family AT3G56370 67.418 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vimu10g01569 PK_Tyr_Ser-Thr 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01569 - - gmx:100791629 1709.5