Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01563 ATGGCTGCACCTTCTTCTTCAAATTGGGTCATGGAAACTCCTCATGATCTTCCTCATGTTTTGGCCGTCGACGACAACCTTATTGATCGAAAACTCGTCGAGAAACTCCTCAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAGCACGAACGGTAGATCCAAAGTAAATTTGGTAATCACAGACTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCTGTAGTGATAATGTCTTCTGAGAACATACCGACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCTTAAAGCCCCTCAAACAATCCGATGTAAAGAAACTGACA 426 0.4272 MAAPSSSNWVMETPHDLPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNSTNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLT 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01563 142 Gene3D - 19 142 - -
Vimu10g01563 142 ProSiteProfiles Response regulatory domain profile. 19 142 IPR001789 GO:0000160
Vimu10g01563 142 Pfam Response regulator receiver domain 20 140 IPR001789 GO:0000160
Vimu10g01563 142 SUPERFAMILY CheY-like 18 138 IPR011006 -
Vimu10g01563 142 CDD REC_typeA_ARR 20 141 - -
Vimu10g01563 142 SMART REC_2 18 142 IPR001789 GO:0000160
Vimu10g01563 142 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 141 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01563 Vimu-Chr10 17533535 17534584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01563 5 141 Response Regulator Gene Family AT3G56380 69.784 1.57e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu10g01563 Response_reg 1.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01563 K14492 - gmx:100499827 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01656 1 16324372 16325684 Vimu10g01563 10 17533535 17534584 PCT