Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01560 ATGCCACCGGAAGACGGTTTCACTTGGAGGAAATATGGACAGAAAGAAATACTTGGATCCAAATACCCAAGGAGTTACTACAGATGCACACATCAGAAGTTATATGAATGCCAAGCCAAGAAGATGGTACAAAGACTTGATCACAATGCTAACATATTTGAGGTAACATACAGAGGGAAACACACATGCCATATGTCCTCCACAGCACCATCGTCAGTTCCCCCAGAACATATTTTGGTCGACATCACACAAAATACTAACACCATTTCCTCTCAATTGTCTCCGTCAGTCAATCTCACCCTCCATCCCGCTAGTGGCACCGCCGCCACCACTAGTGCCAGGGGCGGAGCTTCCACCTCAAGATACGGCGGTGATTATCCCGTCGTAGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAACAACAGCATGGAATTTCTCTTCTCTCCCACTGAAGATAAAAGTGATGCAAATTGA 486 0.463 MPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKMVQRLDHNANIFEVTYRGKHTCHMSSTAPSSVPPEHILVDITQNTNTISSQLSPSVNLTLHPASGTAATTSARGGASTSRYGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPTEDKSDAN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01560 161 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 76 IPR044810 GO:0003700
Vimu10g01560 161 SUPERFAMILY WRKY DNA-binding domain 2 65 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01560 161 SMART WRKY_cls 3 65 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01560 161 Gene3D WRKY domain 1 66 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01560 161 ProSiteProfiles WRKY domain profile. 4 66 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01560 161 Pfam WRKY DNA -binding domain 4 63 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01560 Vimu-Chr10 17460252 17461403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01560 1 158 WRKY Transcription Factor Family AT2G40740 47.468 9.40e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g01560 WRKY 4.1e-26 CL0274