Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01559 ATGAACAAGACCCTCGTCACAGAGCTTCTTCTCGGTCTCGACTATGCCACTCAGCTCAAGTTCTTGCTTCAGAAACCTGTTGACCCAGATGCCTCTGTTGCAGCTAAGGAACTAGTTACCAATGTGCACAGATCTTTCGCTCAAACTCTCTCTATCTTGACTTCCCACCCTGCCAGGGCTCAAGACCAGGTTGCTCAGAATCTCTTGATTTCTGGGGAAGATGCCTCGCAGGCTGCAAGCATTGATCACAGGTCTCACGATTCAACTGAGAGTAGAAAGAGATCGTTTCCCCTCTCAAAGGATCGAAGAGGTTCCTACAAAAGAAGGTCTTACTTCACTCTTTCTCATTTCCCTTCCTCAAGAAAGCCTGTTTTGTCAGTGATTGGGGAGGTGGTGTTGAGAGGATTTGGTGATTTGGGATGTGTACGGACGGAGTCCTTGAAGACTGAACAGACATGGACCATAGTTTCCCACACTACTGATGATAATCATGCGTGGAGAAAGTACGGACAGAAGGATATTCTAAATTCTCAGTTTCCCAGGAGTTACTTCAGATGTACTAGGAAGTTTGAACAAGGTTGCAAAGCCACCAAACAAGTGCAACGGTTAGAAGAGAATCCTGATATGTACAATATTACGTACATTGGGTTTCACACATGCAAAGACATCCTCAAGGCTCCACAAATGGTCACATGTTCTGAAACTTGGGACTCCTTTCTTGAGAATTCCCATGAAGACTTAAATGTTCCAAATGAACAAAAGCAACACGATCCTCCTATGAGATCACAAAGCCCAATTGTTAAACAAGAATGTCTCAATGATGAGACTGATCCCAGTGATCTTACAGATGCCAACCTGTGGTCTGATTTGAAGGATTTTGAACTGTCCAATGACAAGCCTGCCTTGAAAATATCATCTGAAAATGCAGATGCATTCATGTACTTGCTCTCGGAGTTTGGACATGAATTTTGA 972 0.4383 MNKTLVTELLLGLDYATQLKFLLQKPVDPDASVAAKELVTNVHRSFAQTLSILTSHPARAQDQVAQNLLISGEDASQAASIDHRSHDSTESRKRSFPLSKDRRGSYKRRSYFTLSHFPSSRKPVLSVIGEVVLRGFGDLGCVRTESLKTEQTWTIVSHTTDDNHAWRKYGQKDILNSQFPRSYFRCTRKFEQGCKATKQVQRLEENPDMYNITYIGFHTCKDILKAPQMVTCSETWDSFLENSHEDLNVPNEQKQHDPPMRSQSPIVKQECLNDETDPSDLTDANLWSDLKDFELSNDKPALKISSENADAFMYLLSEFGHEF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01559 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 250 IPR044810 GO:0003700
Vimu10g01559 323 SUPERFAMILY WRKY DNA-binding domain 157 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01559 323 SMART WRKY_cls 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01559 323 Pfam WRKY DNA -binding domain 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01559 323 Gene3D WRKY domain 146 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01559 323 MobiDBLite consensus disorder prediction 79 102 - -
Vimu10g01559 323 ProSiteProfiles WRKY domain profile. 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01559 323 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01559 Vimu-Chr10 17430163 17432168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01559 5 261 WRKY Transcription Factor Family AT3G56400 36.015 5.30e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g01559 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01559 - - vun:114164744 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01757 1 18771433 18777028 Vimu10g01559 10 17430163 17432168 PCT