Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01549 ATGCCGATCAGAAACATCACCATTGGAAGGCCTGAGGAAGCCACTCATTCCGACAAGTTGAAGGCGACCTTGGCTGAGTTCGTCTCCACCTTCATCTTCGTGTTCGCCGACTCAGACTCTGACATAGCCCACTACAAAATCACTAACAACGGCGCCGCCACACCTGTCGGACTCATCTCCGCCTCCATCGCCCATGCATTCGGCCTTTTTGTCGCCGTCTCCGTCAGTGCCAACATATCCGGAGATCGCATGAACACTGCCGTCATATTCGGACTTGCCATTGTTAGTTGGACCTGGAAAACAACTGGATCTACCGGGTTGGCCCTCTCATCGGTAGTGGCATCACCGGCGACACCTTTGGCAGATCGGCGGCTCGTGGCGGTTGGCTCGTGGCGACTAGTTCAATGGTGGATCATGTGCGTCTGA 426 0.5516 MPIRNITIGRPEEATHSDKLKATLAEFVSTFIFVFADSDSDIAHYKITNNGAATPVGLISASIAHAFGLFVAVSVSANISGDRMNTAVIFGLAIVSWTWKTTGSTGLALSSVVASPATPLADRRLVAVGSWRLVQWWIMCV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01549 141 Pfam Major intrinsic protein 14 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu10g01549 141 PANTHER AQUAPORIN-8 6 94 IPR034294 -
Vimu10g01549 141 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu10g01549 141 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu10g01549 141 Gene3D Glycerol uptake facilitator protein. 4 114 IPR023271 -
Vimu10g01549 141 SUPERFAMILY Aquaporin-like 13 96 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01549 Vimu-Chr10 17212557 17214402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01549 1 91 Major Intrinsic Protein MIP AT2G36830 68.132 1.09e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01549 K09873 - gmx:100527509 137.502