Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01548 TTGATTTTGCATCAAACAATAATCATGAAGTTGCAGTTCTCTATTGTTGCAGTTATTCTATTAAGCTCCACACTTTCTTTCTGTGGCATGATTGTAGCGGACTTGAAGTCTGACAAAGAAGTTCTGTTGGAGTTTGCTTCAAGTGTTCTACATGCCCCAAGACTCAACTGGAAGAATGACGCTGCCTCAATTTGCAACTCATGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGTCTTCACCTTCCTGGAATGGGATTAACTGGGACCATTCAAGAGAACAGCATAGGGAAACTAGATGCTCTTAGGGTCCTCAGTCTTCATTCCAATGGTCTCAGAGGAAATCTTCCTTCTAACATCCTCTCTATTCCTTCACTCCAATTTGTATACCTCCAGCACAATAACTTCTCTGGTGCAATTCCTTCTCCTGTGTCCCCTAAACTCTTTGCATTGGATATCTCCTTTAACTCCTTTTCTGGCAGCATCCCACCTGCAATTCAGAACCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGTCTCAAACATTTGAACTTGAGTTATAATAACTTCAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCTTCTTTTGTCGGTAACTCTCTCTTATGTGGGCCACCACTAAACGATTGCTCTACAATCTCCCCTTCTCCATCTGCTTCCACTGATGCTTACCAGCCACTCACCCCACCTACCATCCAAAACCAAAAGGGTACCAACCATAAGAAAAGCTTTGGCCTGGCTCCTATTCTTGCTCTAGTCATTGGGGTCTTTGCCTTCCTCTCTCTGCTAGTTGTAGTGATCTGTGTGTTCTGTTTGAAGAGGAAGAAGAACAGTACAAGCAGTGGCATACTGAAAGGAAAGGCTTCGTGTGCTGGAAAGACAGAGGTTTCAAAGAGTTTTGGAAGTGGGGTGCAAGGGGCCGAAAAAAACAAACTATATTTCTTTGAAGGTTCCTCTTCAAGCTTTGACCTTGAGGATTTGTTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATATAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCATTTGGAGATTGTGGGGAAATTTGGAAGCCATCCAAATGTGATGCCCCTAAGGGCTTATTACTATTCCAAAGATGAAAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCACGGAAACAGAGGTGCAGGAAGAACCCCACTTGACTGGGATTCCAGAGTGAAGATTTTGCATGGAGCAGCCAAGGGAATTGCTTTCATCCACTCCGAGGGAGGTCCAAAATTCACACATGGGAACATCAAGTCAAACAATGTGCTGATAACCCAAGAACTAGAAGGCTGCATCAGTGACGTTGGATTGCCACCTCTAATGAACACCCCAGCAACCATGGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTACGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTAGCTAAGGGCTCAGAAAATAGGCCTAGAATGGATGAAGTTGCTAGAATGATTGAGGAAATTAAGCATCCTGAGTTGAAGAACCGGCCATCTTCTGAGTCTGAATCTAATGTGCAAACACCATGA 1764 0.4376 MILHQTIIMKLQFSIVAVILLSSTLSFCGMIVADLKSDKEVLLEFASSVLHAPRLNWKNDAASICNSWVGVTCNSNGTRVIGLHLPGMGLTGTIQENSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFVYLQHNNFSGAIPSPVSPKLFALDISFNSFSGSIPPAIQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSYNNFNGSIPNSIKTFPYSSFVGNSLLCGPPLNDCSTISPSPSASTDAYQPLTPPTIQNQKGTNHKKSFGLAPILALVIGVFAFLSLLVVVICVFCLKRKKNSTSSGILKGKASCAGKTEVSKSFGSGVQGAEKNKLYFFEGSSSSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGKFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILHGAAKGIAFIHSEGGPKFTHGNIKSNNVLITQELEGCISDVGLPPLMNTPATMEEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSENRPRMDEVARMIEEIKHPELKNRPSSESESNVQTP 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01548 587 ProSiteProfiles Protein kinase domain profile. 356 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01548 587 Gene3D Ribonuclease Inhibitor 37 149 IPR032675 -
Vimu10g01548 587 Pfam Protein kinase domain 360 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01548 587 SUPERFAMILY Protein kinase-like (PK-like) 360 575 IPR011009 -
Vimu10g01548 587 Pfam Leucine Rich repeats (2 copies) 174 212 IPR025875 -
Vimu10g01548 587 Gene3D Transferase(Phosphotransferase) domain 1 432 519 - -
Vimu10g01548 587 SUPERFAMILY L domain-like 63 235 - -
Vimu10g01548 587 Gene3D Ribonuclease Inhibitor 150 239 IPR032675 -
Vimu10g01548 587 PANTHER OS05G0588300 PROTEIN 515 579 - -
Vimu10g01548 587 FunFam pollen receptor-like kinase 1 324 431 - -
Vimu10g01548 587 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Vimu10g01548 587 Gene3D Phosphorylase Kinase; domain 1 322 431 - -
Vimu10g01548 587 FunFam Leucine-rich repeat receptor-like protein kinase 151 237 - -
Vimu10g01548 587 MobiDBLite consensus disorder prediction 567 587 - -
Vimu10g01548 587 FunFam Leucine-rich repeat receptor-like kinase 38 150 - -
Vimu10g01548 587 ProSitePatterns Protein kinases ATP-binding region signature. 362 393 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01548 Vimu-Chr10 17206573 17208920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01548 13 585 Receptor kinase-like Gene Family AT5G58300 52.031 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g01548 Pkinase 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01548 - - gmx:100818444 969.148