Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01546 ATGACTGGTAATATATACTGTAATTTTTTAGAATGGTATCTGAATGAAACTGGTAATATATACTGTCATATTCACGGTATGATGGTGTATGTTTTAGGGCCTGCAAGGTGTTATCGGCAGATAAAGAACAAACCATACCCCAAATCACGCTTCTGTCGTGGCGTTCCTGATCCTAAAATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAATTTCCTTTCTGCGTCCATTTGGTTAGCTGGGAAAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGAATTGCATGCAACAAATATATGGCAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCGTTCCACGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTCGGAAAGCCACTGGGTACATGTGCTAGAGTGGCCATTGGCCAGGTCCTTCTTTCAGTCCGCTGTAAGGACAGCAACAGTCATCATGCACAGGAGGCCCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTTCTGATTATCTCAAGTACAAGTCAGAGAACAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAATCGTCAACCTGGAAGAGCTTTTCTGACGAGTGCTACTGCTTAA 753 0.4356 MTGNIYCNFLEWYLNETGNIYCHIHGMMVYVLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLTSATA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01546 250 SUPERFAMILY Ribosomal protein L16p/L10e 34 202 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 NCBIfam 50S ribosomal protein L16 33 203 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 FunFam 60S ribosomal protein L10 31 235 - -
Vimu10g01546 250 Gene3D Ribosomal protein L10e/L16 31 246 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 ProSitePatterns Ribosomal protein L10e signature. 137 158 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 Pfam Ribosomal protein L16p/L10e 41 195 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 PANTHER 60S RIBOSOMAL PROTEIN L10 34 242 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu10g01546 250 CDD Ribosomal_L16_L10e 70 195 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01546 Vimu-Chr10 17190119 17191404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01546 34 249 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.037 1.84e-142 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01546 K02866 - atri:130810566 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01553 1 14481462 14482420 Vimu10g01546 10 17190119 17191404 PCT