Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01542 ATGGCTTTGAAGTGTTTATTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTTCGTCGGCAGGGTCAAATGTTAACTCTGATTGAGTACACTCTTCTGCTGTATCGTGCCTTGTTGCCAACACCTGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCTTTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCTACAACAGAACAGAACAAGACATTGAGGGAAAGAAAGGACAGAAGAGGGAATAAGGGGGAGGAAAGACTAAAAAATATAGAGGAAAGTTGGAATCCAGAATTTTTTCGAGGAAGAAACAGGGATAGGCAATCTTATTGCATGAGAAATAGGAATTACCTGAAGACGGTTGTGCAATTGCTAGAAATACTTCTTGTTGTCAGAGGTAGTGTTTTGACAACTGGACATGAATTGAAGATGTGTGGAAGACTGTGGAAGACTGAAAGGAAGGCAATAGGATTACCAGATAGAGAAATTGGCTTAGTAGGCTGCATCTCTCCCATGAACAGGAGACAGCAACCATGTTGGATGTGTCAGATGAGGCAATCTGTGCAATATTCACATTTTAAAACTGTGAGTGCCGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGGGAACGGACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAACCAAAAATCTTCCTGGGAAATGTCACCTTCTTTGGTTTGGTACAATTTTCCATTAA 930 0.4086 MALKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQNKTLRERKDRRGNKGEERLKNIEESWNPEFFRGRNRDRQSYCMRNRNYLKTVVQLLEILLVVRGSVLTTGHELKMCGRLWKTERKAIGLPDREIGLVGCISPMNRRQQPCWMCQMRQSVQYSHFKTVSAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTTKNLPGKCHLLWFGTIFH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01542 309 SUPERFAMILY RING/U-box 235 284 - -
Vimu10g01542 309 SMART ring_2 237 274 IPR001841 -
Vimu10g01542 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 285 IPR013083 -
Vimu10g01542 309 CDD RING-HC_RNFT1-like 235 275 - -
Vimu10g01542 309 ProSitePatterns Zinc finger RING-type signature. 252 261 IPR017907 -
Vimu10g01542 309 Pfam Zinc finger, C3HC4 type (RING finger) 235 278 - -
Vimu10g01542 309 ProSiteProfiles Zinc finger RING-type profile. 237 275 IPR001841 -
Vimu10g01542 309 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 104 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01542 Vimu-Chr10 17120690 17124101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01542 219 292 C3H Transcription Factor Family AT5G01960 75.325 1.03e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01542 - K22379 gmx:100784614 208.764