Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01531 ATTGCCCAAGCACAGAGAATAAAAATGGCGGCAATGGGAGTTGCAGCACAAACGCAGTTACAGTTAGAGAAACACGTGATAGAGGGTTTCACTTCGAGATCCATGGAATTGAAATGGGTTAGTCGAAGAAGCAGCAAAAGCGCACAGCTTGAGAAGACGAAGTATCAGTTGAGACCCCTTTTCCCAATTTACATTTCCACTGATCCACGCCACGTCGATCCTCTCCGTCTCCGGGACCTCTTCACCGATTGCAACTACTCTACCCAAAGATTTCCGACCCAACCCGTACCTGAACCCGTGGACATCCACAAGCTCCGCATTGCTCTGTCTCACAGTGCCGTGGTTGTGTCCGTCTTCTGCAACCTCCGCCACGTAAACGGCGTGGTTCCATATCCCGACAATTTATCGTCTTCTTTGATCGCGGATTTCTTCACGCCGACTTCTCCTTCACGTGATCAGTTGGTTGGGTTTGGCCGAGCCGTTTCTGATTATGGCCTCACCGCTTCGATTTACGATGTTGTGGTTATTCCTTCCTTGCAGAGAATGGGAATTGGTCGGATGATAGTTAAAAAAATTGCGAGAATGCTTGCAAATAGAGACATATACGACATAGCAGCCCTTTGCTCAGAGAATGAAAGGTTATTTTTTAAGGCGTGTGGATTTGGGGACGACATTTTGAACTCCACTACCATGATGTACAGAAGAACTGTTCCATTAATAACCCAGGAAGATATCGAGGTAAGGCATCATTTGAAAAACCGCAAAAGACGTTCACTTCTTTTCCTGCGAAACCCTTATCTAAGGAGGCTTACAGTAGACAACATCGCTTCAAGTTCTCGTCCTTTCATTCCTGGACTTTCTATGGGGATAATATGGGTGGAGGTTTGCTTGATATCTGCACATGGACTCCAGCATTCAACCTCACTTTGGAAGCGTCAATGGTTTGCTGTTGGGTGGATCGATATTAACAGCAAATATTGCACCAAGGTCGTTGATTCAGGGAGTGCAAATCCTGTATGGAGAACCAAGTTTGCTATTCCAGTTGAGGACTCAGCACCAAATCTCCTGGATTTGGTACTGAACGTGGAAGTTTACAGTACAGACCCCATATTCTTCATGGAAAAGCTTCATGGCTCAGCAACAGTTTTTCTCAGAGAGTTTCTTGTCGAGCAGGTAATGAATTCTGAGGTATCCAATCCCAAGCAGCAGGGAGTTGGAAGCTACCAATTACGAAAGAAGAAATCTAGCAAACCAAGAGGTTTCATCGATATTTTAATTTGTATTACTAAGGAAAAGAATGAGCCAAATCCCCACTCAGGAAACAAGGATGGAATTTTGCTCTTAGATAATGGAGATAGTACCCAATTCAACATAGAGGGAGGAGTAAGGCAAGCATACCGTCGGAAACCTCAAGCTTCAGTCCATCAGCCAGAATATCATGTACATACAAACGTCCCAGAGTATCATTCAGAACCATTCACCACCACAAACTATTATAATCCACATCTGGGTGAAGCAAGCTACCATGAGATTGGTGAACCAAGCTACCATGGGACAGGAGAAACGAGTTACCAAGAGGTGGGTGAACCAAGCTACCATGAGACAACTGGACCAAGCTATCAGCTGCCCAGAACAATAACTCCTCCTCCACCGCCCCCACCATCAAATATTGGTTATATTCCCGCCTTTCTCCCAATAAATGATGGCTTGTCTCCAAGCTACACAGACATGTCAACAGCCAGGGCAGTCCCTGGTAAGAAGGTAAATGCAGGAGGTGCAATGGGGTTAGGTGCTGGAGCACTAGCTGCTGGTGCTGTAATATTTGGTGATGACTTCATGTCAGGATTTGATGTTCCTTCGGACCTAGAAATGGATCCTCCTTTCTGA 1887 0.4552 IAQAQRIKMAAMGVAAQTQLQLEKHVIEGFTSRSMELKWVSRRSSKSAQLEKTKYQLRPLFPIYISTDPRHVDPLRLRDLFTDCNYSTQRFPTQPVPEPVDIHKLRIALSHSAVVVSVFCNLRHVNGVVPYPDNLSSSLIADFFTPTSPSRDQLVGFGRAVSDYGLTASIYDVVVIPSLQRMGIGRMIVKKIARMLANRDIYDIAALCSENERLFFKACGFGDDILNSTTMMYRRTVPLITQEDIEVRHHLKNRKRRSLLFLRNPYLRRLTVDNIASSSRPFIPGLSMGIIWVEVCLISAHGLQHSTSLWKRQWFAVGWIDINSKYCTKVVDSGSANPVWRTKFAIPVEDSAPNLLDLVLNVEVYSTDPIFFMEKLHGSATVFLREFLVEQVMNSEVSNPKQQGVGSYQLRKKKSSKPRGFIDILICITKEKNEPNPHSGNKDGILLLDNGDSTQFNIEGGVRQAYRRKPQASVHQPEYHVHTNVPEYHSEPFTTTNYYNPHLGEASYHEIGEPSYHGTGETSYQEVGEPSYHETTGPSYQLPRTITPPPPPPPSNIGYIPAFLPINDGLSPSYTDMSTARAVPGKKVNAGGAMGLGAGALAAGAVIFGDDFMSGFDVPSDLEMDPPF 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01531 628 Gene3D C2 domain 292 445 IPR035892 -
Vimu10g01531 628 PANTHER GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE 64 232 IPR039143 GO:0004343|GO:0006048
Vimu10g01531 628 MobiDBLite consensus disorder prediction 518 539 - -
Vimu10g01531 628 Pfam Acetyltransferase (GNAT) family 152 221 IPR000182 GO:0016747
Vimu10g01531 628 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 151 221 IPR016181 -
Vimu10g01531 628 Pfam C2 domain 294 389 IPR000008 -
Vimu10g01531 628 CDD NAT_SF 152 201 - -
Vimu10g01531 628 Gene3D - 61 225 - -
Vimu10g01531 628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 288 431 IPR035892 -
Vimu10g01531 628 ProSiteProfiles C2 domain profile. 271 397 IPR000008 -
Vimu10g01531 628 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 152 246 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01531 Vimu-Chr10 16974304 16978084 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu10g01531 C2 7.7e-06 CL0154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01531 - - vun:114162458 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01557 1 14571369 14572799 Vimu10g01531 10 16974304 16978084 PCT