Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01530 ATGGAGGAGGTTTTTGTTGCATTGAAACTGGTTTCAGTTGCTCTTGTGGGGGTTCTAAGCTGGGTACTCTATGGGTATGGTAGATTGCGGTATGAGTCTCAAAGGGTGAGAAAGAGGATACTAATGCAAGGAATAAAAGGGCCTCCACCTTCTTCTTTTCTGCATGGAAATCTGCCTGATATTCAGAGAATTCAAGCTCAGGTTGCTAGCCAAGCCAAAGCTTCTGCTTCAACCTCCAACCAATCTGATCAGCTTGTGGCTCATGACTACACTACAACCCTCTTCCCTTATTTTGAGCACTGGAGGAAACAATATGGTTTACTGTACACTTACTCCACAGGGTGGAAGCAGCACCTGTATGTGAATCAACCGGATCTAGTAAGGGAATTGAATCAGAGCATCACTTTGGTTTTGGGTAAGCCTGGTTACTTAACAAACAAACTTGCACCTATGCTTGGCAATGGCATTTTGAGATCCAATGGTAACAGTTGGGCACAGCAGAGGAAACTTGTTGCAGCTGAGTTCTTCATGGACAAAGTTAAGGGTATGGTGGACTTAATGATAGAGTCAGCGCAGCCATTACTACTGAAATGGGAGCAAATTATTGAAAGCCAAGGAGGTGCCACAGCTGAAATTAAAGTGGATGTAGATTTCAGAGGTTTATCAGCTGATGTTATTTCAAGGGTTTGCTTTGGCCATTCTTATTCCAAGGGAAAGGAAGTCTTCTCCAAGCTTAGAAGAATACAGATGGCTTTGACCAAGGATAGTAGCTTCCTTTTTGGCAGCAGTTTACGTGAGAAACTGAATTTCTGGTCAAATAAGAAAAACGAGATAGCAAATTTGGAGAAAGAGATAGAGTCACTGATATGGGAGTTAGTGGAGGATCGCAAAAAAGAATGCTCAGAGTCATCCTCCTCATCACAGAAGGATTTGATGCAGTTACTGTTGGAAGCAGCCTCGAGTGATAAGAGTCTGGGGAAGGACTTTTCCAAACGGTTCATTGTGGATAACTGCAAAAACATTTACTTTGCTGGTCATGAAACCACTTCTGTGGCAGCCTCCTGGTGTTTGATGCTTCTTGGTTTGCACACAGATTGGCAGACTCGTATAAGGGCTGAGGTGGCTGAACATTGCCCCAATGGTATACCAACTGCAGATTCTCTCCCTCAGTTGAAAACGCTGGGTATGGTGATTCAAGAAGTGATACGTTTATACCCACCAGCATCCTTTGTGTCAAGGGAGGCATATGAAGATATCCAAATTGGACACCTGAATGTTCCTAAGGGTGCTTTTCTGTGGACTCTGATCCCAACCTTACACAGAGATCCTGAAATATGGGGACCAGATGCTAATGAGTTTAAACCAGAAAGGTTCAGTGAGGGAGTGTCGAAGGCTTGCAAGTTTCCAACTTCTTATGCGCCATTTGGGTATGGTACTCGCTTGTGCTTAGGAAAGAACTTTGCACTGGTTGAATTGAAGGTTTGGCTAGCCCTTATCATCTCCAGGTTTAGCTTCACTCTGTCTCCTAATTATAAGCACTGTCCAACATATATAATGATTGTGGAACCAGAACATGGTGTTGATCTTATCATTCAGAAGAACTGA 1605 0.4336 MEEVFVALKLVSVALVGVLSWVLYGYGRLRYESQRVRKRILMQGIKGPPPSSFLHGNLPDIQRIQAQVASQAKASASTSNQSDQLVAHDYTTTLFPYFEHWRKQYGLLYTYSTGWKQHLYVNQPDLVRELNQSITLVLGKPGYLTNKLAPMLGNGILRSNGNSWAQQRKLVAAEFFMDKVKGMVDLMIESAQPLLLKWEQIIESQGGATAEIKVDVDFRGLSADVISRVCFGHSYSKGKEVFSKLRRIQMALTKDSSFLFGSSLREKLNFWSNKKNEIANLEKEIESLIWELVEDRKKECSESSSSSQKDLMQLLLEAASSDKSLGKDFSKRFIVDNCKNIYFAGHETTSVAASWCLMLLGLHTDWQTRIRAEVAEHCPNGIPTADSLPQLKTLGMVIQEVIRLYPPASFVSREAYEDIQIGHLNVPKGAFLWTLIPTLHRDPEIWGPDANEFKPERFSEGVSKACKFPTSYAPFGYGTRLCLGKNFALVELKVWLALIISRFSFTLSPNYKHCPTYIMIVEPEHGVDLIIQKN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01530 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 475 484 IPR017972 GO:0005506|GO:0016705
Vimu10g01530 534 Coils Coil 271 298 - -
Vimu10g01530 534 Pfam Cytochrome P450 92 525 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PANTHER CYTOCHROME P450 FAMILY MEMBER 20 526 - -
Vimu10g01530 534 PRINTS P450 superfamily signature 344 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS P450 superfamily signature 473 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS P450 superfamily signature 482 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 472 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 102 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 482 505 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 221 239 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 333 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 PRINTS E-class P450 group I signature 353 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 SUPERFAMILY Cytochrome P450 91 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g01530 534 Gene3D Cytochrome P450 31 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01530 Vimu-Chr10 16964343 16969481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01530 126 527 Cytochrome P450 AT5G24900 55.774 6.02e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01530 K20661 - gmx:100815776 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01530 10 16964343 16969481 Vimu10g01530 10 16964343 16969481 ECH