Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01522 ATGGAGTCTCTGAAAGCAGCTATTCCAGAAAGCCTGAAGCGAGCGATAGAGGATAGCAATGTCGAGGATCTTCAAAGCACGTGCTCTTTTCTTCATCGCTTCTTTCTCCACTTCGACCCATTTCACCAGATTATCGCTCAACTTGCTGATCCAAAGTATGGTCTGTGCGGTAAGAGTAAGGAATATGCCTTGAAATCCAAGCAGCTTGGTAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTATACTCAGGAGCTTTTGCTACCGCACATTGTTCATGGCAGCATCTCAAATAGCATTGTCAGAGATGATAACGGAACTACTAGTACCTGCAAGCAAGTTATTGTCCCGAAGACTGCTCGTTCTAGTGTAGATTACCTATCCGAGATTGGGAAGGCATTGCGCAAGGCTCCATTAGATGTTGGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGGGCTACTGTATTGCATAGAATGAGTCTTTTAGTAGAATGCTTGCGGGATTGCACTCATGCTCTTCAAATTTGTCCAAGCTACTCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTATAGAAATGCAATTTGCGACCTAAATGTGGCCAAGATTCTGGAACCTTCAATGGGTGGAAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAGTGCGATAGTACAGATACAACATAAGGAGAACAGCTGCAATACTGTGGGTGAGATGCCTCAAGTAAAGCTGCAGTGTATCTCCATCCCTGATAAAGGAAGAGGCATGGTCTCATCATGTGTCATTTCACCAGGTTCTTTAGTTCATTCTGAAGAACCTTATGCTATGATAATTTTAAAGCAATGTCGGGAAACCCATTGCCATTATTGCCTGAATGATCTACCTGCTAATAGAGTTCCTTGTTTATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCAGGTGGGCAAATGTTCAGGATGTACCCAGAAAAAAATGACACTTTTAAAAAAATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAGCAATGATTCTGAACAAAAAAGTGAGGATATTACTGAACATAAACATGAATGCCGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCCGAATAGCACGTCTGATAGTATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACATATGTCATCTGAAAGCAAATTGGATTCACACATATATGCCATTGTATTGTTGTATTGTCTTCAATACTCATGTGGAACTATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCATTATTATCTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATAGATGCTCATGGACTATCAGGTCATTTTGGAGAATTTCCATTAAAATCTGATGCACATTCAACTAGTAACGTGGAACAGGTCAGAGTGGGTAAAGCTATCTATAAAGCTGCCAGTTTATTTAACCATTCTTGCCGACCGAATGCTCATGCATATTTTCTTTCACGCACTCTTTACATACGAATCACACATGGTGTAGCAGCTGGTTGTCAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTACAGATCGCCTTAACTTTCTCAAAGACGAATATGCGTTTCATTGTCAGTGTATTGGTTGTTCAGAAGTCAATGTATCCGACATAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGCGCAGTGTTAGAAAGCAGAGTACTTGACTGTGAGCAGCAGAAAATCAAGCACTTCACTATTACTGACCTTGTTGAAAAGAATGATGACATTTGTGAAGTACCTCTTAATGTCTTCAAACAAAACGGGGCCCATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCTCATGCTGCAGTCAGTGAAGCTCTAATATGCATAAAAAGGTTGCAGGATGCAAAATCCTCAAAAGACATTTCGAGTATTACTATTTCTGATGCTTTGATGTCTCTTCAATCACTAAGATTCAATTTGCATGCTTACAACAAGCTTATTGCGGAGGTCTGTGTGTTCGGTAGTTTTGGAATACCCGTACTGTTCAAGCAAGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTAGGAGAATTACAATTATCTGTTGATCATTGCATAGCTTCTATCCAGATTCTGGAAAAGCTATACGATACTGATGATATTGTTATTGCTTACGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACTGCTATGGAAAGCATAAATCGAATAGATGATATCTTCTCACGTTATTATGGATGTCATGCAGACTTGGTGTTCCCTTATCTTCAATATCTTAGGGGAGAAATTGAGAAATTTTCAGTGAAGGGCATCCAATAA 2553 0.3999 MESLKAAIPESLKRAIEDSNVEDLQSTCSFLHRFFLHFDPFHQIIAQLADPKYGLCGKSKEYALKSKQLGNECFSNADYAKALDCYTQELLLPHIVHGSISNSIVRDDNGTTSTCKQVIVPKTARSSVDYLSEIGKALRKAPLDVGDMKSNLVATLYINRATVLHRMSLLVECLRDCTHALQICPSYSKAWYRRGKANASLGNYRNAICDLNVAKILEPSMGGKRQIEGELKILLDQCKSTSAIVQIQHKENSCNTVGEMPQVKLQCISIPDKGRGMVSSCVISPGSLVHSEEPYAMIILKQCRETHCHYCLNDLPANRVPCLSCSIPLYCSHQCQIRAGGQMFRMYPEKNDTFKKMPSDLGEYASEVIQSNDSEQKSEDITEHKHECRGVHWPVVLPSEIVLAGRILARFLPNSTSDSIINFVERLELSHCYKHMSSESKLDSHIYAIVLLYCLQYSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGLSGHFGEFPLKSDAHSTSNVEQVRVGKAIYKAASLFNHSCRPNAHAYFLSRTLYIRITHGVAAGCQLELSYGPQVGLWDCTDRLNFLKDEYAFHCQCIGCSEVNVSDIVLNAFHCVNPNCSGAVLESRVLDCEQQKIKHFTITDLVEKNDDICEVPLNVFKQNGAHIHGQPGYCLKCGSYCDLESSHAAVSEALICIKRLQDAKSSKDISSITISDALMSLQSLRFNLHAYNKLIAEVCVFGSFGIPVLFKQAEDSIAQAFCLVGELQLSVDHCIASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAMESINRIDDIFSRYYGCHADLVFPYLQYLRGEIEKFSVKGIQ 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01522 850 Gene3D Tetratricopeptide repeat domain 574 838 IPR011990 GO:0005515
Vimu10g01522 850 SUPERFAMILY TPR-like 61 221 IPR011990 GO:0005515
Vimu10g01522 850 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 90 - -
Vimu10g01522 850 Gene3D SET domain 276 306 IPR046341 -
Vimu10g01522 850 Gene3D Tetratricopeptide repeat domain 57 230 IPR011990 GO:0005515
Vimu10g01522 850 Gene3D SET domain 467 568 IPR046341 -
Vimu10g01522 850 Pfam SET domain 274 569 IPR001214 GO:0005515
Vimu10g01522 850 ProSiteProfiles SET domain profile. 263 569 IPR001214 GO:0005515
Vimu10g01522 850 SMART tpr_5 154 187 IPR019734 GO:0005515
Vimu10g01522 850 SMART tpr_5 63 96 IPR019734 GO:0005515
Vimu10g01522 850 SMART tpr_5 188 221 IPR019734 GO:0005515
Vimu10g01522 850 SUPERFAMILY SET domain 267 594 IPR046341 -
Vimu10g01522 850 Gene3D - 307 339 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu10g01522 SET 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01522 K24634 - gmx:100783548 1306.58