Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01516 ATGGTGGAAAGTGTTGGTGATGATGAGAATAAGAAGAAGGAGGAGGTTAAGAGTCTGGCATTCTTGAAACTGTTGAGCTATGCTGACATGGTGGATTGGATTCTGATGGGTTTGGGAAGTGTTGGTTCCATTGTGCATGGAATGGCACTTCCTGTGGGGTATCTGTTGTTGGGAAAAGCTCTTGATGCTTTCGGAAACAATATTGAAAACATAGATGCCATGGTTAAGGCTCTTAAAAAGGTTGTTCCATTTGTCTGGTATATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTGCGGCTAAGATTAGCATATCTGAGAGCAGTTCTTAACCAAGAGATAGGAGCTTTTGATACAGAGCTAACAACTGGGAAAGTGATCAGTGGAATAAGCAACCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCAATATGCTGTTGGGAAGTGACGCTTTTATGTTTAGTGGTTGTCCCACTTATTCTTGTAATTGGGGCGACTTACACAAAGAAAATGAACATCATATCAACCACCAAAATGCTTTTCCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCTATCAAATCCTTTACAGAGAACATGGATAAGCAATATATTATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGGACAGGGATGTTGCAAACAGTGAGTTTCTGTTCTTGGGCTTTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCAGGAAGAGCAACAGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCACTGACTTATGCAGCACCAGACATGCAAGTATTCAATCAGGCAAAAGCTGCAGGATATGAAGTTTTCCAAGTGATCGAAAGAAAGCCTCTGATAAGTAATGAATCAGAAGGGAAGATGCCTAGCAGAATCAAAGGTGACATTGACTTTCAAGATGTTCACTTTTCCTACCCATCACGCCCAGACAAACCAATCCTTCAAGGACTGTCATTGTCCATTCCAGCTGGAAAAACAGTAGCATTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGGTTAACAGATTTTACGATCCTTCAAGTGGAGTTATCTTTATTGATGGTCAGAATATGAAGGATCTTAATCTGAAGTTCCTTCGACGAAACATAGGGGCCGTTTCCCAAGAGCCATCACTCTTTGCAGGCACCATCGAGGATAACTTGAAAGTGGGGAAAATGGATGCAGATGATCAAGAGATTCAGAAGGCAGCTGTAATGTCAAATGCACACTCTTTCATATCTCAGCTGCCTAATCAGTACCTGACACAGGTTGGAGAAAGGGGAGTCCAATTATCAGGAGGACAAAAACAGAGAATTGCAATAGCCAGAGCCATTCTGAAAAATCCTCCTATCCTTTTGCTTGATGAAGCCACTAGCGCCCTCGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTACGCAGGGAAGGACTGTCATCATGATCGCACACAGGCTCTCAACAGTTGTAAATGCAGATATCATTGTTGTAGTCGAGAATGGACAAGTTGCGGAGACAGGTACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTTAGCATGCAGAACCTTGAACTGGTTGCTGAACCCAGAGCTACGATTTCAAAGACTAAAAGTGCCCGCCAAGAAGATTTTCCTACTGAAATTAGACCACCAGTAGAGGTGCAGGGAGAGGTCCAAAAGAATATTACCGAGCACTCTGTGCTAAAGGAACACAACAAACTGGGCAGCGGAAAAAGAAATATATTTTTCAGAATTTGGTTTCGTCTTAGAAAGAGGGAGCTAGTGAAGGTTTCTATTGGCTCAATTGCAGCAGCTTTCTCTGGTATCTCAAAGCCATTTTTTGGGTTTTTCATCATCACCATAGGAGTAGCATACTTTAAGGAAGATGCAAAAAAGAAAGTTGGACTTTATTCAGCCATCTTCACTGCAGTAGGGATGCTTTCATTATTCAGCCACACCGTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTGCTCTGTATTCAGGTCTGCTACGTAATGAAGTAGGTTGGTTTGACAAATCAGAGAATACTGTTGGTTCATTGACTTCACGCGTTATCAGTGACACTGCCATGGTCAAAGTAATCATTGCTGATCGAATGTCTGTAATCCTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGAGTTTGGTAGCTTGGTCCGTGATGCCCTGCCACTTCATAGGTGGTCTTATTCAAGCCAAGTCTGCCAAAGGATTTTCTGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCCGAGTCTACAACCAACATAAGGACTATTGCCTCATTTTGTCATGAAGAACAAGTATTGAGGAAAGCCAAAACATCCCTGGAAATTCCAAAGAAAAAGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTATGGAACATTGCACATGCTGTTGCTCTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCAGCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACGCTGATCCCAACTGTCATCTCGGCTATCAATATACTGACCCCAGCATTCAAAACCCTCGATCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCACAACCAGAGAGGATCCAAGGAAATGTAGAATTTGAAAATGTAAAATTTAACTATCCTTCAAGACCCAAAGTCACCGTTCTTGATAATTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTCTGTCCCTTTTACTACGATTTTATGATCCACAGGGAGGAAAGGTGTTAATTGATGGAAAAGACATACGGGAATATAATCTAAGATGGTTAAGGACACAAATAGGACTAGTACAGCAAGAACCACTGCTTTTTAATTGCTCAATTAGAGACAACATTTGCTATGGCAATAATAGGGCTTCTGAAAGTGAAATAGTGGAGGCTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATTTACCAAATGGATATAGCACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCCGGAGGTCAAAAGCAAAGAATAGCCATTGCCAGAACAATACTAAAGAAGCCTGCAATTTTACTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAGGAATTGTAGTAAACGCCTTAAACGCAATACATCTGAAGGAAGACCGTGGATTGCGTTCAAGAACCACCCAGATAACAGTAGCTCATAGACTTTCCACAGTGATAAACTCAGATACTATAATTGTCATGGACAAAGGTAAAGTTGTACAGATGGATTCCCACTCGACCCTAATAACAGTAGAGTCAGGACTTTATTCAAGGATGTTCAGGTTACAGAGCTTCGAAGAAACTTCATAG 3735 0.4163 MVESVGDDENKKKEEVKSLAFLKLLSYADMVDWILMGLGSVGSIVHGMALPVGYLLLGKALDAFGNNIENIDAMVKALKKVVPFVWYMAIATFPAGVLEIGCWMYASERQLLRLRLAYLRAVLNQEIGAFDTELTTGKVISGISNHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVTLLCLVVVPLILVIGATYTKKMNIISTTKMLFHSEATSMIEQTISQIKTVYAFVGESSAIKSFTENMDKQYIISKGEALVKGVGTGMLQTVSFCSWAFIVWVGAVVVRAGRATGGDIIAAVMSILFGAISLTYAAPDMQVFNQAKAAGYEVFQVIERKPLISNESEGKMPSRIKGDIDFQDVHFSYPSRPDKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVNRFYDPSSGVIFIDGQNMKDLNLKFLRRNIGAVSQEPSLFAGTIEDNLKVGKMDADDQEIQKAAVMSNAHSFISQLPNQYLTQVGERGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETATQGRTVIMIAHRLSTVVNADIIVVVENGQVAETGTHQSLLDTSRFYSTLFSMQNLELVAEPRATISKTKSARQEDFPTEIRPPVEVQGEVQKNITEHSVLKEHNKLGSGKRNIFFRIWFRLRKRELVKVSIGSIAAAFSGISKPFFGFFIITIGVAYFKEDAKKKVGLYSAIFTAVGMLSLFSHTVQHYFFGVVGEKAMANLRRALYSGLLRNEVGWFDKSENTVGSLTSRVISDTAMVKVIIADRMSVILQCVSSILIATVVSMAVNWRMSLVAWSVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEQVLRKAKTSLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFENVKFNYPSRPKVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLSLLLRFYDPQGGKVLIDGKDIREYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNRASESEIVEAAKEANIHEFVSNLPNGYSTVVGEKGCQLSGGQKQRIAIARTILKKPAILLLDEATSALDAESEGIVVNALNAIHLKEDRGLRSRTTQITVAHRLSTVINSDTIIVMDKGKVVQMDSHSTLITVESGLYSRMFRLQSFEETS 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01516 1244 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Vimu10g01516 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1238 IPR027417 -
Vimu10g01516 1244 FunFam ABC transporter B family member 4 349 603 - -
Vimu10g01516 1244 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Vimu10g01516 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Vimu10g01516 1244 CDD ABC_MTABC3_MDL1_MDL2 992 1238 - -
Vimu10g01516 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g01516 1244 SUPERFAMILY ABC transporter transmembrane region 23 341 IPR036640 GO:0005524|GO:0016020
Vimu10g01516 1244 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 975 - -
Vimu10g01516 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g01516 1244 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524|GO:0016887
Vimu10g01516 1244 Gene3D ABC transporter type 1, transmembrane domain 23 938 IPR036640 GO:0005524|GO:0016020
Vimu10g01516 1244 Pfam ABC transporter 377 526 IPR003439 GO:0005524
Vimu10g01516 1244 PANTHER ABC TRANSPORTER B FAMILY 6 726 IPR039421 -
Vimu10g01516 1244 SMART AAA_5 1019 1213 IPR003593 GO:0016887
Vimu10g01516 1244 SMART AAA_5 386 572 IPR003593 GO:0016887
Vimu10g01516 1244 Gene3D - 349 597 IPR027417 -
Vimu10g01516 1244 FunFam ABC transporter B family member 4 982 1243 - -
Vimu10g01516 1244 Pfam ABC transporter transmembrane region 674 936 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g01516 1244 Pfam ABC transporter transmembrane region 38 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu10g01516 1244 Pfam ABC transporter 1010 1159 IPR003439 GO:0005524
Vimu10g01516 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1236 IPR003439 GO:0005524
Vimu10g01516 1244 CDD ABC_MTABC3_MDL1_MDL2 359 596 - -
Vimu10g01516 1244 Gene3D - 982 1243 IPR027417 -
Vimu10g01516 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Vimu10g01516 1244 SUPERFAMILY ABC transporter transmembrane region 662 978 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01516 Vimu-Chr10 16718915 16726181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01516 9 1243 Calmodulin-binding Proteins AT2G36910 41.831 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01516 K05658 - qsa:O6P43_014878 1858.19