Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01486 ATGGCCACCCAAAACCAAACACACTCTCTTCCAAACACCACCATCGACCCAAACACTGGTTTCTGTTCTTCTTCTAAAATCTTTCACAGCCTCCGTCCAAACGTCCCCCTCCCTCCGCTGTCTCAGCCGCTCTCCCTCACCGATTACGCTCTCTCCCTCCTCCCCGCCGCCGCCACCGCCACTGAAAACTCCGCTCTCATCGATGCCACCACCGGCCGTCAGCTCTCCTACTCCCTCTTCCTCTGCCAAGTAAAATCCCTCGCCTCCTCCATCCAATCTATCACTCCTCTCTCCAAAGGCCACGTGGCACTAATCCTCATTCCAACCTCCCTGCACGTCCCCGTACTCTACTTCTCTCTCCTCTCGCTAGGCGTCACAGTTGCACCTGCCAACCCGCTCAGTACCGCTTCCGAGTTGACTCACCTCGTCCGACTCACAAAACCCGCCATCGCCTTCGCATCCTCCGCCGTCGCCTCAAACATCCCCGCCCTCAAATTCGGCACTGTTCTCACCGACTCCCCGCTCTTCCTCTCCATGCTCGACGCCAACGTAGACTCACACTCACGCGCTCCCGGAGTTGAAGTGAGTCAGTCCGACTCCGCCGCAATTCTCTTCTCATCGGGCACCACCGGGCGCGTGAAGGGCGTGTTTCTCACCCACCGGAACTTCATCGCACTCATATCCGGGTACTATCACCTGAGGAACAACCAGCTAGCTGCCGGCGAAGCGGAGCCGCATCCCGTGTCACTGATCACGCTGCCGCTGTTTCACGTGTTCGGGTTCTTCATGCTGGTCAGATCCATCGCTTTGGGGGAGACGCTCGTTCTGATGCAGAGATTCGATTTCGAAGGGATGCTCAAAACCGTGGAGAGGTATAAAATCTCAATGATGCCGGTGTCGCCGCCGCTCGTGGTGGCCCTCGCCAAGTCGGAGCTCGTGAACAAGTACGACCTCAGCTCGCTCCGGATGCTAGGTTGCGGCGGCGCTCCACTCGGCGAGCAGGTAGCCAATGATTTCAAAGCCAAATTCCCCAACATGGAAATTTCCCAGGTCCCACTTTTTGGAGATAGCCAAACCTGTCCCACTGTCGTAGGACTCAAAGGGGGCCTCATAAATTGTAAAAAATATCTTACAAAAATGTCCACTATTTCTTCTAACCAGAATGGAGGAGGAGCAGCCAGAACATTTGGACCTGAGGAGATAAAGCGCCATGGCTCTGTGGGTCGATTATCAGAAAACATGGAGGCCAAGATAGTGGACCCTGAAACTGGAGAGGCATTGCCTCCTTGCCAAAAAGGGGAACTGTGGATTCGAGGTCCAACTATCATGAAAGGTTATGTAGGAGATGAGAAGGCGACAGCTGAAACATTGGATTCAGAGGGATGGCTGAAGACGGGGGATCTTTGTTATTTTGACTCTGATGGTTTCCTCTACATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAATTGGAACATATACTTCACACAAATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTACCCTGATGAAGAAGCAGGGCAGATTCCTATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACATCTCTGGAAATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCTCCCTACAAGAAGATACGGCGTGTTTCTTTTGTCAATTCTATCCCAAAATCTCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTATCCAGTGGTTCATCCAAATTGTGA 1776 0.5208 MATQNQTHSLPNTTIDPNTGFCSSSKIFHSLRPNVPLPPLSQPLSLTDYALSLLPAAATATENSALIDATTGRQLSYSLFLCQVKSLASSIQSITPLSKGHVALILIPTSLHVPVLYFSLLSLGVTVAPANPLSTASELTHLVRLTKPAIAFASSAVASNIPALKFGTVLTDSPLFLSMLDANVDSHSRAPGVEVSQSDSAAILFSSGTTGRVKGVFLTHRNFIALISGYYHLRNNQLAAGEAEPHPVSLITLPLFHVFGFFMLVRSIALGETLVLMQRFDFEGMLKTVERYKISMMPVSPPLVVALAKSELVNKYDLSSLRMLGCGGAPLGEQVANDFKAKFPNMEISQVPLFGDSQTCPTVVGLKGGLINCKKYLTKMSTISSNQNGGGAARTFGPEEIKRHGSVGRLSENMEAKIVDPETGEALPPCQKGELWIRGPTIMKGYVGDEKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSNISGNQVMEFVAKQVSPYKKIRRVSFVNSIPKSPAGKILRRELVDYALSSGSSKL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01486 591 SUPERFAMILY Acetyl-CoA synthetase-like 56 584 - -
Vimu10g01486 591 Gene3D - 485 585 IPR045851 -
Vimu10g01486 591 CDD 4CL 38 579 - -
Vimu10g01486 591 Pfam AMP-binding enzyme C-terminal domain 498 573 IPR025110 -
Vimu10g01486 591 Gene3D - 27 484 IPR042099 -
Vimu10g01486 591 FunFam 4-coumarate--CoA ligase 2 485 586 - -
Vimu10g01486 591 Pfam AMP-binding enzyme 57 489 IPR000873 -
Vimu10g01486 591 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 581 - -
Vimu10g01486 591 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01486 Vimu-Chr10 16302311 16305361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01486 15 591 Monolignol Biosynthesis Gene Families AT5G63380 56.973 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01486 K01904 - gmx:100777435 868.996