Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01484 ATGTTTGCACAACCAACTCTGTTGAACAATTCAAATGGTCAAAGATATTTAAGCTCATATGAGTTTTCAATAATTTTAATGGGACTTCTTTTAAATTTGTTTAAGGCAGGTTTTCCATTGGATTCTTTACACGAGCAAGTTGCTCCTTGCTCCTTGAAGCAGTGTCCAAAGAAGAGTAGAACATTCCTCATGGGATTTCATGACTTTGTTTTGCTATTCTGTTCATTTTGGTGTGTCTTTTTTGTAAGTAGTTGCAGTTCTCAGATGCAGTCCTCTCAGACCCAAGTGCTTCTTCAGTTGAAAAAGCACTTGGAGTACCCAAGACAATTGGAAATATGGAGAGATCGTTGGACAGATCTTTGCTCTGTTTCTTCTTCTGGGCAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCTCCATCTTGGGTGATAAGCCAACCGAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCGAACATTATCAGATAGCTTCTCCATGGACTCTTTTGTGGCTACACTGGCAAGGTTAACCAGCCTGAGAGTGCTTAGTCTTGTCTCTTTGGGCATGTGGGGACCACTCCCTGATAGAATTCACAGACTCTATGCACTTGAACATCTGGATTTGAGTTCCAATTATCTTTATGGATCAATCCCTCCTAAGATTTGCACAATGGTGAACCTTCAAACTCTTGGATTGGGTGATAACTTCTTCAATGGAACCATCCCGAACGTGTTCAATTCATCAAGCAATCTCTCAGTTCTTAGTTTGAGGAATAACATGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCTCTTTAAAAGACATTGACATGTCAAGCAATCAAATATCAGGGATACTGCAAGATTTTAGTGCTTTGAGTAGCTTGGAACAGCTAGATTTAGGAGAAAACAAATTAGAGTCTTTCCTGCCAGCAATGCCAAAAGGGTTGATTAGTCTTTTCCTCGGAAGAAATTCCTTCTCAGGTGAAATTCCCAAGCCCTATGGTCAACTTAACAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACTGGCACTGCTCCTGCTGAACTTTTCTCTTTGCCAAACATCAGTTACTTGAATTTGGCTTCCAACATGTTGAATGGACCACTGCAAAGTCACCTAAAATGTAGCAGCCAACTTAGATTTGTTGACATATCATACAATAGGTTAGTGGGGGACTTACCTTCTTCACTGAGCTCTAGATCAGAAAATAGAATCGTTAAGAGTGACGGAAACTGTTTATCTGGGGGAGTGCAGCATCAGCATTCAGTATCCTACTGCACAGAAGCTCATGTCAAGAAGAAATCATATAGAGTTGGAATTTTTGTTGGTGTCATTGTAGGAATTCTTTTAATCTCTGTGGTTTTGGCTTTGACCATTGTCATAACTTGTAAGAAGTTCTTCTTTCGAGGTGTGTCAGAGCAACACCTATTGCATAAAACAGTTCAAGATAGCAGCTACGCGGCAGGGTTCTCCTCTGAGCTTGTGACAAATGCAAGGTATATTTCTGAAATTGCAGAGTTAAGCAGAGAGGACCTCCCCACATGTAGGTCTTTTTCTTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAACTACAGAGTGGGATACAGATTGTAATAAGGTCCCTGCCTGTGTCAAAAAAGTATTCAGTTAGAAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTCCGTCACCCTCATTTGGTATCCCTTCTTGGTCACTGCATTGATGATGTTGTAGGAGAGAATAATGAGACAAATGTCTTTCTCATTTATGAATATGTGCCAAATGGGACTTTTCAAACTTATCTCTCTGGACATAGTTCTGGCAAGGTTTTCAACTGGTCTGAGCGATTATCAGTACTAATCAACATTGCTAAGGCTGTCCACTTCCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGTGACAATATCTTGCTGAGTGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGGGGTAAAAGGAGAAAGTCCTAATTCGTGGCAAATGAAAATGTTAGAGGATGATGTTTATAGCTTTGGATTCATACTACTGGAGGCACTGGTTGGACCTTCAGTATCAGCTGAAAAAGTAACAGCTGTGTTGAATGTAATGGAAACTTTCAATAGTCAGGATGGGTGGAAAGGGATTGTGGACCCAGTTGTGCAAGCTACTTGCTCAAAAGAATCTCTTTTTGTTGTGATTTCCATAACAAATAAATGCATATCTCCTGAGTCATGGAACCGACCATCCATTGAGGATGTTCTTTGGAACCTTCAGTATGCTTCACAAATTCAGGCAACAGATGATGGATGA 2469 0.403 MFAQPTLLNNSNGQRYLSSYEFSIILMGLLLNLFKAGFPLDSLHEQVAPCSLKQCPKKSRTFLMGFHDFVLLFCSFWCVFFVSSCSSQMQSSQTQVLLQLKKHLEYPRQLEIWRDRWTDLCSVSSSGQVNVTCKDNFVTELSILGDKPTEGRDFDGFAIPNRTLSDSFSMDSFVATLARLTSLRVLSLVSLGMWGPLPDRIHRLYALEHLDLSSNYLYGSIPPKICTMVNLQTLGLGDNFFNGTIPNVFNSSSNLSVLSLRNNMLKGPFPPSILSVTSLKDIDMSSNQISGILQDFSALSSLEQLDLGENKLESFLPAMPKGLISLFLGRNSFSGEIPKPYGQLNRLQKLDVSFNALTGTAPAELFSLPNISYLNLASNMLNGPLQSHLKCSSQLRFVDISYNRLVGDLPSSLSSRSENRIVKSDGNCLSGGVQHQHSVSYCTEAHVKKKSYRVGIFVGVIVGILLISVVLALTIVITCKKFFFRGVSEQHLLHKTVQDSSYAAGFSSELVTNARYISEIAELSREDLPTCRSFSLEELKEATNNFDNSTFMGENIYGKLYRGKLQSGIQIVIRSLPVSKKYSVRNFKLRLDLLAKLRHPHLVSLLGHCIDDVVGENNETNVFLIYEYVPNGTFQTYLSGHSSGKVFNWSERLSVLINIAKAVHFLHTGMIPGFFKNRLKSDNILLSENWMAKLSDYGLSIISEEADACGVKGESPNSWQMKMLEDDVYSFGFILLEALVGPSVSAEKVTAVLNVMETFNSQDGWKGIVDPVVQATCSKESLFVVISITNKCISPESWNRPSIEDVLWNLQYASQIQATDDG 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01484 822 Pfam Protein tyrosine and serine/threonine kinase 552 807 IPR001245 GO:0004672|GO:0006468
Vimu10g01484 822 ProSiteProfiles Protein kinase domain profile. 546 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01484 822 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 629 822 - -
Vimu10g01484 822 SUPERFAMILY Protein kinase-like (PK-like) 529 811 IPR011009 -
Vimu10g01484 822 SMART LRR_typ_2 204 228 IPR003591 -
Vimu10g01484 822 SMART LRR_typ_2 344 368 IPR003591 -
Vimu10g01484 822 SMART LRR_typ_2 276 298 IPR003591 -
Vimu10g01484 822 SMART LRR_typ_2 299 322 IPR003591 -
Vimu10g01484 822 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 157 811 - -
Vimu10g01484 822 Gene3D Transferase(Phosphotransferase) domain 1 629 821 - -
Vimu10g01484 822 Gene3D Phosphorylase Kinase; domain 1 508 628 - -
Vimu10g01484 822 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 323 447 - -
Vimu10g01484 822 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 90 321 - -
Vimu10g01484 822 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Vimu10g01484 822 Gene3D Ribonuclease Inhibitor 323 457 IPR032675 -
Vimu10g01484 822 Gene3D Ribonuclease Inhibitor 90 322 IPR032675 -
Vimu10g01484 822 SUPERFAMILY L domain-like 46 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01484 Vimu-Chr10 16254349 16258848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01484 71 758 Miscellaneous Gene Families AT5G14210 50.000 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vimu10g01484 PK_Tyr_Ser-Thr 6.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01484 - - gmx:100802978 1239.17