Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01480 ATGGCTGCACTGAGCTCTCTCTCCCTCTCTCTCCGCCCCCTCTCTCTCCGCCGCAAACCAACCACAACAACCTCCGCTACACTTTCTTCACTCCCAGGGAGAACCCATGGGTCTACAACCAAAGCGCCTCGCAGAAGAGCTAGGCGAACCGAAGGTCCTAGAAAAAGCATGGAGGACTCGGTTCAACGCAAGATGGAGCAGTTTTACGAAGGCTCTGATGGGCCTCCGCTTCGCGTTCTTCCCATTGGTGGTTTGGGGGAGATTGGGATGAACTGCATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGACGAGCTTGGAGTTCAGAAGATTATACCTGATACCACGTTTATACGAAAGTGGAGCCATAAAATTGAGGCGCTTGTCATCCCAGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAGCAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAGGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCATTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTTGTGGCAGATGCATTGTTGAGACATATTTCAGCTTCTAATGGAAGGGTCATCACCACCCAATTTGCATCAAATTTACATCGGCTTGGGAGTGTGAAGGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCCCGTGCTGCCTTGAACCTCGCATCGTATGGAAGTAGTCATGCTTTCAAATTAACCAAGGAAGATCTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAACGAGTCTCGTGTGATGAAAATGCTAAACCGTATATCGGAAATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTGGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAACAGAAAAGTCCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTTTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCCAAAATTCTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGAAAGTTGATGGATGCACTCTACAAATCAGCCCATGCCGCTCTTTCAAGCTGCCCCGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGCATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTATAGAAAATCCTGCATCCACTATTACTGATGAGATAAACACAAAACTGTCTGGGAAAACCCATGGGGGTCTTGGAATATCAACAGCAAAAAGAGCAGTGGATAGACATGAGAAAGGAAATCAACCCACCTCACTGCAAATTACAGATGATAATATTCATAATGCCAGTGGACCTGAGAATTATTTATCTGAGGAAGACAACACTGCAAGCGGAGCTGTGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCACCATTACCTGTCGAGAAGCCTTTGGGTGCTAACAATGCTTATGATTCACAAAAGGAGCATGAGTCCAATCGGAAGAAAGATGATTCTAAGATCATTGATGAAGCTAAGTCTGAAGAAATCTCTACTTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACGGATGAAGTTAAGAAGCTGATTAGTATGCGTGAGGAACTAAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATTGAAGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGAAACAAAATGA 2571 0.424 MAALSSLSLSLRPLSLRRKPTTTTSATLSSLPGRTHGSTTKAPRRRARRTEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVIPALDSNTPIFSSSFTKELISKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKHSGKRPEVIAIAIENPASTITDEINTKLSGKTHGGLGISTAKRAVDRHEKGNQPTSLQITDDNIHNASGPENYLSEEDNTASGAVGDLSESEDSDEFWKPFIAPLPVEKPLGANNAYDSQKEHESNRKKDDSKIIDEAKSEEISTSEPKSSKSVKRNKWKTDEVKKLISMREELNDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPETK 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01480 856 Gene3D - 765 825 - -
Vimu10g01480 856 Gene3D - 263 413 IPR042173 -
Vimu10g01480 856 SMART Lactamase_B_5a 89 271 IPR001279 -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 648 699 - -
Vimu10g01480 856 PANTHER RIBONUCLEASE J 1 856 - -
Vimu10g01480 856 Pfam Myb/SANT-like DNA-binding domain 762 846 IPR044822 -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 715 763 - -
Vimu10g01480 856 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 476 IPR036866 -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 13 62 - -
Vimu10g01480 856 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 419 456 IPR011108 -
Vimu10g01480 856 CDD GT1 763 828 - -
Vimu10g01480 856 CDD RNaseJ_MBL-fold 80 476 - -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 13 37 - -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 726 763 - -
Vimu10g01480 856 MobiDBLite consensus disorder prediction 657 693 - -
Vimu10g01480 856 Gene3D - 81 478 IPR036866 -
Vimu10g01480 856 ProSiteProfiles Myb-like domain profile. 757 821 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01480 Vimu-Chr10 16140797 16166550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01480 764 850 Trihelix Transcription Factor Family AT2G38250 33.708 2.47e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu10g01480 Myb_DNA-bind_4 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01480 - - gmx:100783850 1460.66