Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01475 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACGCCAACAAGAGGCCGTCGTCGTCTGAAGACAAAACTCCCTCCCCTTCCCCCAAGCGCCAAAAGGTCGACAATGTTGCTGCCGCCTCGGAGAAACCGATGCCGCCGGCGGAAAATTCAAAGGATTTGGGCATGCGGGAGCCTCCCGCTGATCCCGGAGAATGCGAATCTCGAGACGCTCAGATCGCCGGTGACGTCAATCCAGATGGCAAGGCCGATCCCACGCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTTGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGGCTGTTTATCAGAAGCAAAACCCGAATTTCGAGGCTTCAGTTCCCTGGTGTAGACTCTTGTCTCAATCTGCGCAGAATCCCAATGTTTTAATTTGCACACCCAACTTTACTATTGGGTCTAGTAGGGGTTGCAATTTCCCGTTGAAGGATCAGACTATTAGTGGAAATTTGTGCAAGATCAAGCACACGCAGCGCGAAGGAAGTGCTGTGGCCGTGCTAGAAAGTACGGGTAGCAAAGGATCGGTGGTAGTGAATGGAACGCTCCTCAAGAAGAGTACCAGTTGTGTGCTTAGCTCGGGGGACGAGATTTTTCAGCAAATAAATCCTGAAGTTGCAGTTAAAGCTGCAGAAATTCAGGGTGGTGTCAGCAAGTTTTTCCAGATTGAAAGGAGGGCTGGAGACCCTTCAGCCGTGGCTGGAGCTTCTATTCTGGCTTCTCTTTCTAGCCTCAGACCGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCGGTAAACCTCTTCAGGGTACTGATGTTCCTAGTCATTCTGTTCTTCCTGATGGTACAGAGACTGGGCTCGATGGTCTGGAAGGCAACTCTGCTCCAAATATAGCGACAGATAAAGCTGCTGATGTTGGAGCAAGTGACAAGAATTTGCCTATGGATTGCGATTCAGATGATGCTGGCACAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGCTTTCCTAGGGCCTTTCTTCAGGATTCTAGCTGGATCTACTTGTAAAGTGAAATTGAGCAAAAGTATCTTTAAACAGGTATTTGAAGAAAGACATGGGACGAGGGATGTGCAAGCTGCATCGACTTCCGGTACTTCTGTTCGCAGTGCAGTTTTTAAAGAGGATGTTCATGCTGCAATACTGGATAGGAATGAAATAGAAGTGTCCTTTGACAACTTCCCTTACTACTTAAGTGAGAATACAAAAAATGTTCTAATTGCGGCTTGCTTTATACACCTGAAGCATAGAGAACATGCAAAGTACACCACTGATCTTACAACCATAAACCCTCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATACCAGGAGATGTTGGCAAAAGCACTTGCGAAGCACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGCTTAACTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAATGCTGATAAATCCTGTGGCTGCGCTAAACAAAGTCCTTTAACTACAGACATGGCTGGGAGCGTGGATCCACCAGCTAGTGAACCAGAGACGCAGAACTCCACAAATGCACCTACTACTCCATGTGGTTTTGAGTCTCAACTTAAGTTTGAAACTGATAATTTACCATCTACATCTGGGGCAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATACAGTTCATCTTCTGGGGGAATATATCAGCTTCAGACAATTTCTACAAGGTACAGCAATCGCATATACAGGGGTCCACCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGACCTTGGAGGTTGCTGTGAGGGTGGTCAAGGATTTTTCTGCCATGTGAATGATCTTCGGTTGGAAAACAGTGGCATTGAAGAACTTGACAAATTACTCATTAATACATTATTTCAGGTTGTGGTCAGTGAGAGCAGAAATGAACCCTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAACGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTGGTAATAGGTTCACATACTCACACTGACAGTCGTAAAGAGAAGTCCCATCCTGGGGGTTTACTTTTTACGAAGTTTGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCAAACAAAACCTTAACTAAACTTTTCCCGAATAAAGTGACAATTCACATGCCACAGGATGAAGTACTTCTAGCATCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAATTTACGTTCTGTTTTGAGCCGTTGTGGGGTGGAATGCGAAGGGCTTGAATCCTTGTTCATTAAGGATCAAACACTTAGTATTGAAAATGCAGAGAAGATTGTTGGTTGGGCTATAAGCCGACATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGCATCTTACAGTCTATCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGTTATTTTGCAAAGGGCAATTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCTCCTGGAACAGGCAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCGAGTATCACATCTAAGTGGTTTGGTGAGGGCGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGAAGGATACTGAGAGAGTTCTGGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGCTGCCTCGGAGGTTAATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTCATACTGGCAAAAGAAGATTTGTCTTCGGGTCTTGATTTGAATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATTTGTGTGTAACTGCTGCACATTGTCCAATTAAAGAGATATTAGAGAAGGAAAAGAAGGAACAGGCTGCTGCTCTGGCAGAAGGTAGACCTGCTCCGGCAATAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAGTATGCTCATCAACAGGTGTGTGCAAGCGTTTCCTCTGAATCCGTAAATATGACGGAGCTTCAACAATGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAGAACATTAAGCTATTTCATGTGA 3702 0.439 MVSTRRNSGSFSNANKRPSSSEDKTPSPSPKRQKVDNVAAASEKPMPPAENSKDLGMREPPADPGECESRDAQIAGDVNPDGKADPTPPIADGSTPTVVADKPRGSFSSWAVYQKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRGCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVVVNGTLLKKSTSCVLSSGDEIFQQINPEVAVKAAEIQGGVSKFFQIERRAGDPSAVAGASILASLSSLRPDLTRWKSPSQTAGKPLQGTDVPSHSVLPDGTETGLDGLEGNSAPNIATDKAADVGASDKNLPMDCDSDDAGTEAGNVKISGVNAFLGPFFRILAGSTCKVKLSKSIFKQVFEERHGTRDVQAASTSGTSVRSAVFKEDVHAAILDRNEIEVSFDNFPYYLSENTKNVLIAACFIHLKHREHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKHFGAKLLIFDSHSLLGGLTSKEAELLKDGFNADKSCGCAKQSPLTTDMAGSVDPPASEPETQNSTNAPTTPCGFESQLKFETDNLPSTSGAAKNCVFKLGDRVKYSSSSGGIYQLQTISTRYSNRIYRGPPNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGCCEGGQGFFCHVNDLRLENSGIEELDKLLINTLFQVVVSESRNEPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEVLLASWKQQLDRDVETLKIKGNLHNLRSVLSRCGVECEGLESLFIKDQTLSIENAEKIVGWAISRHLMQNAETDPDAKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSGLDLNAIASMTDGYSGSDLKNLCVTAAHCPIKEILEKEKKEQAAALAEGRPAPAISGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRTLSYFM 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01475 1233 ProSitePatterns AAA-protein family signature. 1072 1091 IPR003960 GO:0005524|GO:0016887
Vimu10g01475 1233 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 927 1103 - -
Vimu10g01475 1233 Coils Coil 889 909 - -
Vimu10g01475 1233 SMART AAA_5 965 1102 IPR003593 GO:0016887
Vimu10g01475 1233 Gene3D - 927 1208 IPR027417 -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 266 280 - -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 524 551 - -
Vimu10g01475 1233 Pfam AAA+ lid domain 1123 1157 IPR041569 -
Vimu10g01475 1233 SUPERFAMILY SMAD/FHA domain 118 213 IPR008984 GO:0005515
Vimu10g01475 1233 Gene3D - 125 223 - -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g01475 1233 CDD RecA-like_ATAD1 932 1098 - -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 1 102 - -
Vimu10g01475 1233 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 397 1232 - -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 534 551 - -
Vimu10g01475 1233 Pfam FHA domain 147 213 IPR000253 GO:0005515
Vimu10g01475 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1206 IPR027417 -
Vimu10g01475 1233 MobiDBLite consensus disorder prediction 266 321 - -
Vimu10g01475 1233 Gene3D - 1101 1195 - -
Vimu10g01475 1233 Pfam ATPase family associated with various cellular activities (AAA) 969 1098 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01475 Vimu-Chr10 16067428 16080712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01475 928 1180 Calmodulin-binding Proteins AT3G56690 40.000 9.90e-42 165