Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01474 ATGGCAGTCACATTCTACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCTCACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGACGATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAACTGAGTATGTCAATGTGTCTAGGTGGTTCAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTAAGGGATCTCTTGTTGCTGAGCCTGTTGCAACTCCCCCAGCTGCGGATACAAAGGCAAGTATCTTTCTTATGATAGATATTTCAATTGTGGCTGCTGCTGCTGAGGATGACGATGATGATGATGTGGATTTGTTTGGTGAAGAGACAGAGGAAGAGAAGAAGGCAGCGGAGGAACGGGCAGCTGCAGTGAAGGCATCTGGAAAAAAGAAAGAATCCGGGAAGTCATCTGTTCTGTTGGATGTGAAACCATGGGATGATGAAACCGACATGAAGAAGCTCGAGGAAGCAGTGAGATCTGTTAGCATGGAAGGCTTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGCATCAAGAAACTGCAAATTATGCTTACTATCGTGGATGACCTAGTTTCTGTCGACACTCTTATTGAGGAACATCTCACAGTTGAACCCATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAATAAAATTTGTAAGTACTTTTAA 741 0.4507 MAVTFYDLSSASGLKKLDEYLLSRSYITGYQASKDDLTVYAALPTAPSTEYVNVSRWFKHIDALLRISGVSGEGSGVTVKGSLVAEPVATPPAADTKASIFLMIDISIVAAAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVSMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPINEYVQSCDIVAFNKICKYF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01474 246 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 117 125 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vimu10g01474 246 Pfam EF-1 guanine nucleotide exchange domain 155 242 IPR014038 GO:0003746|GO:0006414
Vimu10g01474 246 Coils Coil 125 145 - -
Vimu10g01474 246 Gene3D - 4 80 - -
Vimu10g01474 246 SUPERFAMILY GST C-terminal domain-like 11 67 IPR036282 -
Vimu10g01474 246 SMART EF1_GNE_2 153 242 IPR014038 GO:0003746|GO:0006414
Vimu10g01474 246 FunFam Elongation factor 1-beta 1 like 147 242 - -
Vimu10g01474 246 SUPERFAMILY eEF-1beta-like 150 242 IPR036219 -
Vimu10g01474 246 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 242 - -
Vimu10g01474 246 Gene3D - 146 242 IPR014717 -
Vimu10g01474 246 FunFam Elongation factor 1-delta 1 3 78 - -
Vimu10g01474 246 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 231 242 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vimu10g01474 246 CDD EF1B 151 242 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01474 Vimu-Chr10 16015212 16016502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01474 5 242 Eukaryotic Initiation Factors Gene Family AT2G18110 77.500 2.21e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01474 K03232 - gmx:100777627 362.459