Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01440 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAGTTCAAAGATGTTGCTGCTGCTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGCTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGATGGGTGCAATTCTGATCTTAGCAATTGTAGAGATTATCATAGGCGACACAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACCCGACCTGGTAGTTTTTTATCGAATTACCAAGGTACTCAGTTGCTACCATTCTCAAATCCACACGTGTATCCTTCCGGTGCCATGATGAGCACCCCATGGAGTGGAGGGCTTGTGACATCCTCTGCAGATGCTAGGTTGCACAACCAACACCACCATCAAGAGCTTTTTCTAGGATCTTCTCAGAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACGTTAACCATCCCTCCACAGGTGCACTGAGCAACCAAAGCATTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACAGCTGGGAATGGTTTGAATCAAATGGTGCAGGCACCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGTCTGCAGGATAACACCAACTTAGATTCTGTGGAGCGAGTGTTGGTTCCCAATGGGAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCATCAACTGTTCCCCTTTCAATGGGAATAG 1155 0.4823 MDWNLKAPSWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTEFKDVAAAAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQGTQLLPFSNPHVYPSGAMMSTPWSGGLVTSSADARLHNQHHHQELFLGSSQKEGKQVAFLHGNVNHPSTGALSNQSIPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSQTHTAGNGLNQMVQAPSMSLMQPLGLSLQDNTNLDSVERVLVPNGSDHCSSMYSLGSDGSHCNEAHQLFPFQWE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01440 384 ProSiteProfiles Zinc finger SBP-type profile. 89 166 IPR004333 GO:0003677
Vimu10g01440 384 MobiDBLite consensus disorder prediction 154 168 - -
Vimu10g01440 384 SUPERFAMILY SBT domain 90 171 IPR036893 GO:0003677|GO:0005634
Vimu10g01440 384 Pfam SBP domain 92 165 IPR004333 GO:0003677
Vimu10g01440 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 377 IPR044817 GO:0003677
Vimu10g01440 384 MobiDBLite consensus disorder prediction 153 178 - -
Vimu10g01440 384 Gene3D - 84 153 IPR036893 GO:0003677|GO:0005634
Vimu10g01440 384 FunFam Squamosa promoter-binding-like protein 14 83 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01440 Vimu-Chr10 15387525 15392244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01440 1 384 SBP-box Gene Family AT5G50670 39.702 5.19e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu10g01440 SBP 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01440 - - gmx:100787407 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01440 10 15387525 15392244 Vimu10g01440 10 15387525 15392244 ECH
Vimu11g04359 11 64920678 64923047 Vimu10g01440 10 15387525 15392244 PCT