Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01431 ATGAGTCCTTTTGCCTTACGGCGTCAGTTTTCTAACGATGCTGGACATAGATGGCTTCTTCCCAAGGGTGCTCCTCTTGTTCTAATAGATGGGGCAAATGTTCTTCACGTTCGTCCCATGGTGGTGGGTGGAGGGGAGGATTTACTTGGGGCTTCTGTAATTGAAGGAAGTGTCTTCATTGTGCATGTGGAACTGTCAGATTCTGGGTCTAAATTTTATTGTTGGGCATTGTCCTACCTCCTTGTTGGTATCACCTTGATGTATACTTCTGAGGAAGGAAATAAAGAAGTAGACACACTGGCTAGCATGGAATGTAAAAAGGATGGTGCCTTAAGGGCAAAAGAACTTGCAGAGAAGATGCTTTTACGGAAGGACTTTGGTGGGGCAAGAATGCTTGCAATGAAGGCTCTAGAATTATATCCCAATCTTGATGGCCTTCCTCGATTTCTGGCAACTATTGAGGTGTATATCTCAGCCGATAAAATGGTTAATGGAGAAGTTGACTGGTACAGGATCCTTGGTGTGCAACCCTTGGCTGATGAAGAAACAATTCGAAAACGATATAGGAAACTGGCTCTTACTCTGCACCCTGATAAAAATAAATCTGTAGGTGCAGATGGGGCGTTTAACCTTATCTCACAGGCTTGGAGTTTATTATCTGATAAGGACAAGAGGACCACATATGACCAAAAGTACAACTTATGGCGAACATATCATGGAAATCCTGGTGGGAAACCATCTGCGCCAGTTACTCAGAATGGTTTATATAGTAGTTTATTCGGTCCTGTGTTGTTGAAACCCACATTTTGGACCATTTGCAACTTCTGTAAGACGAAGTTTGAGTACCATACTGTTTATATTAACTCTGATCTTATCTGTACATGTTGCCATAAGTCATTTGTGGCTTCTGAGACATCACCTCCATCTGTATACAGAAATGGTTCGTCCTCTTCAAGAATTTCTCAGATGAAGCAACATAACTTCAACTTAAGCAGAATGGAAAGAAGTAATGGAAATCATGTTCCCGGAAGGACACCAATGTCTGCTGTCAATTCAGCACATGGGTCAGGTCCTTTCTCCATGCCTAGTAGCACTTTCCGCATACCAACATCAGCTTCTAGTGCTGCAGAAACTCTTGGTGCATTTAGGATGTCTTCTGAAAATATGAAGAGAATGCATGAAGATTCAACTGTGTCTTTAGAGGATGCCCATATTGGGAAAATTCATGCTGCTGAGAGAACTGGTGCTGGTTCAGTTTTTCAGTCCTCTGGTTTTGGTTCATATTCTATCATGAAAGGTGACAAGCCTAGGAAGAGAAGGTCCACTGATGAACATAAAGTAGGTAGAGATGGAAGAGATATGGAAAGCAAAACAGTATCTCAAACTGAAGGAACAAACTTGGGTAATGAATTTGGGTCAGGAAGGGTTAATGCTGCTGGAAATTACAAACGCAATGGTGTCAGGGACATATCACAGCTTCAAATGAAGCACCTATTGATGGAAAAGGCTCGGAAGGAGATTCTTAAAAATCTTGGTGAGTTGAAAGCTTCTTCTGCATCAAAGAGTCTAAACAAGTCAAAGAATACTGACACAGAAATCAGTGAGAAGGGGAAAAGTTGTGAAATTAATGGTTTAAAGCCTGGTGCACTAGAATTTGTTGATTCTAAGGCTGCCGGCAAGAAGTGTTTTTCTGTTCATTCAGATCTTGAGCTTCCTGGTTCTCTCTCTATGAATGTTCCAGACCCAGATTTCCATGATTTTGATGGAGACCGTATTGAAAATGCTTTTGGTGAGAACCAGGTGTGGGCTGCATATGACAATGATGATGGCATGCCCCGGTTCTATTGTTTAATCCATGATGTAATCTCAAAGAATCCTTTCAATATGAGGATAAGCTGGTTGAATACCAAAAGCAATGATGAATTGGCCCCAATAAAGTGGATCAGTTCTGGCTTTCTTAAGACCAGTGGAGAGTTCAGAATAGGAAAGCGTGTGTATTATAGCACTCTTAACTCCTTTTCACACAGGGTGAAATGGACAAAGGGTTCGAGAGGGGTTGTCCATATATATCCGAAGAAAGGTGATGTGTGGGCACTGTATCGGAACTGGTCCCTTGACTGGAATGAATTCACTAAAGACGAAATCATACAGAAATATGACATGGTGGAGGTGCTTGAAGACTACAGTGAAGAGCAAGGGGTGAATGTTGCCCCACTTGTCAAGCTTGCAGGTTTCAAGACGGTATTTCGGCAGAATGTTGATCCAAGAAAGGTCAGGAATATTTCAAAGGCGCAGATGTTTCGTTTCTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAGGGTCCTAATGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACGCCGACGGAGCTTCTTCAGGTGTTGGCTCAAGATCTGGAGCAAGAAATAATAATGACAACTGAAAAATCTGTCAAAGATGAATTGAAGCACAAAGAGAATTCCAGGGAGGAGGATTCGCTTAAGGGGTGCCAGTCAACCAAGGAAGAAGGTTCTGATGCAGGATTAGGAGAGAAGAGAAGCAAGCCTGAGATTTTGTTTGTATATAAGCGGAGACGTCTGGGGGAAAAGAGAGCTGTGAAGTGTTAA 2640 0.4242 MSPFALRRQFSNDAGHRWLLPKGAPLVLIDGANVLHVRPMVVGGGEDLLGASVIEGSVFIVHVELSDSGSKFYCWALSYLLVGITLMYTSEEGNKEVDTLASMECKKDGALRAKELAEKMLLRKDFGGARMLAMKALELYPNLDGLPRFLATIEVYISADKMVNGEVDWYRILGVQPLADEETIRKRYRKLALTLHPDKNKSVGADGAFNLISQAWSLLSDKDKRTTYDQKYNLWRTYHGNPGGKPSAPVTQNGLYSSLFGPVLLKPTFWTICNFCKTKFEYHTVYINSDLICTCCHKSFVASETSPPSVYRNGSSSSRISQMKQHNFNLSRMERSNGNHVPGRTPMSAVNSAHGSGPFSMPSSTFRIPTSASSAAETLGAFRMSSENMKRMHEDSTVSLEDAHIGKIHAAERTGAGSVFQSSGFGSYSIMKGDKPRKRRSTDEHKVGRDGRDMESKTVSQTEGTNLGNEFGSGRVNAAGNYKRNGVRDISQLQMKHLLMEKARKEILKNLGELKASSASKSLNKSKNTDTEISEKGKSCEINGLKPGALEFVDSKAAGKKCFSVHSDLELPGSLSMNVPDPDFHDFDGDRIENAFGENQVWAAYDNDDGMPRFYCLIHDVISKNPFNMRISWLNTKSNDELAPIKWISSGFLKTSGEFRIGKRVYYSTLNSFSHRVKWTKGSRGVVHIYPKKGDVWALYRNWSLDWNEFTKDEIIQKYDMVEVLEDYSEEQGVNVAPLVKLAGFKTVFRQNVDPRKVRNISKAQMFRFSHQVPSYLLTGEEGPNAPKGCLELDPAATPTELLQVLAQDLEQEIIMTTEKSVKDELKHKENSREEDSLKGCQSTKEEGSDAGLGEKRSKPEILFVYKRRRLGEKRAVKC 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01431 879 Pfam DnaJ domain 168 229 IPR001623 -
Vimu10g01431 879 ProSiteProfiles dnaJ domain profile. 168 232 IPR001623 -
Vimu10g01431 879 Gene3D DnaJ domain 166 266 IPR036869 -
Vimu10g01431 879 PANTHER BNAC03G44070D PROTEIN 103 799 - -
Vimu10g01431 879 ProSitePatterns Nt-dnaJ domain signature. 209 228 IPR018253 -
Vimu10g01431 879 SUPERFAMILY Chaperone J-domain 165 249 IPR036869 -
Vimu10g01431 879 MobiDBLite consensus disorder prediction 825 855 - -
Vimu10g01431 879 CDD DnaJ 168 221 IPR001623 -
Vimu10g01431 879 PRINTS DnaJ domain signature 204 224 IPR001623 -
Vimu10g01431 879 PRINTS DnaJ domain signature 188 203 IPR001623 -
Vimu10g01431 879 PRINTS DnaJ domain signature 170 188 IPR001623 -
Vimu10g01431 879 MobiDBLite consensus disorder prediction 426 475 - -
Vimu10g01431 879 Pfam Domain of unknown function (DUF3444) 576 782 IPR024593 -
Vimu10g01431 879 SMART dnaj_3 167 224 IPR001623 -
Vimu10g01431 879 MobiDBLite consensus disorder prediction 458 472 - -
Vimu10g01431 879 MobiDBLite consensus disorder prediction 432 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01431 Vimu-Chr10 15241304 15250521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01431 110 310 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.493 6.83e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01431 - - gmx:100797672 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01431 10 15241304 15250521 Vimu10g01431 10 15241304 15250521 ECH