Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01430 ATGGAGAACAACCAGCAAGGGGGCCAAGGGCAATCGGGAGCGTACCCCGGCGCAGCGCCCGGAAGTGCAGGTGCAGGTGCAGGAGCGCCACCCTTCCAGCACCTCCTCCACCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCCTACCAGCGTCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAGCTGCCCCTCGCTCGCATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGCATGATCTCGGCAGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTTCCTCGCGACGAGATCAAGGACGATGCCGCTCTCGTTGGGGCTACCGCTAGTGGTGTGCCTTACTATTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTCTACGTCCAGCCCCCGTCTCAGGCCTGGCAGTCTGTCTGGCAGTCCGCTGCCGATGACGCGTCGTACGGTGGCGCAGGCGGAGCCGGTGCGCAGGGGAGCATTGATGGCCAGAGGTACATAAATGACTTCTCACTTATGTCCAGTTTGGTCTTGAAAAAAAAAAAGAAATGGAATGGAGACCTAGAATAA 744 0.5968 MENNQQGGQGQSGAYPGAAPGSAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAADDASYGGAGGAGAQGSIDGQRYINDFSLMSSLVLKKKKKWNGDLE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01430 247 SUPERFAMILY Histone-fold 39 136 IPR009072 GO:0046982
Vimu10g01430 247 Gene3D Histone, subunit A 31 142 IPR009072 GO:0046982
Vimu10g01430 247 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 38 159 - -
Vimu10g01430 247 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g01430 247 FunFam Nuclear transcription factor Y subunit gamma 33 142 - -
Vimu10g01430 247 Pfam Core histone H2A/H2B/H3/H4 53 127 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01430 Vimu-Chr10 15238762 15239505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01430 3 202 CCAAT-HAP5 Transcription Factor Family AT3G48590 77.512 5.85e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu10g01430 CBFD_NFYB_HMF 2.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01430 - - gmx:100818447 350.132