Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01396 ATGGAGAAAATATTGAACGCGCGAGTAGGAAGAATGGAGGAAAGAATGATGGCAATAGAGTCGACAATGGAAGAAGTGACGGCAGAGGTGCGAGCGATAACTCGCGAGTTCCGACAACGTTCCAGGAACCGAGATCGGAGCTCCAAAGGAAGACGTAATTTCGTCAATGCTGGACGCGGGCCACGACTGCCGGAAAACTCGAGGGAGGAATCGGAAGAAGACAGAGGAGAAGTTCGACGCAGTCGGAGGAAGCGTGTTGAACTACCTACGTTTGAAGGTGTGGATCTCATGGGCTGGATTGCACAGGCAGAGAAAATCTTCGAACGCCAGAGCGCGACGGAGAAGGAGAAGATGAAGTTCGTCTATAGATGCATGGAGAGAGGTTTAGCGAGCTTCTGGTTCCGCTTCTGGCGGAAGAAAACCACGCATCCGACGTGGAAGAGGTTCACCGATGATCTAACGCGGAGGTTTGGCGGACAACATCAGGACACCGTTGTTGAGAAGCTGCTAGCGGTGCGACAAAAGGGGAGCCTCGACGAGGACATCCAGGAGTTGGAAAGTCTGGTGCCGCGAACATCGGGAAAACCATATCACTCCTCACTTAATGTCTCTGTCAATCTTGGAGCTAGCATTATAAATGGTGGTGGAGCTGCGGGGAAAGGAGGTACGACATGGGGAAGATGTAACTCAAGCTCGGGGACAGTCGCGAGGACGGAAACGTATCGGGGATCATCAGAGGTAATTGTCAACTCCGGCGGAGGGCAGGAAGACGAAGAAGATGAGGTTGAGGAGGGTCCCGAAATCGAACAAAAAACCATGGAATTATCTGTATTATCTGCAGGTGGTTTAACACAGTCTAAAACAATGAAACGGCAAGGTTGGGTGCAAGGGAAAAAGGGATTGGTGTTGATTGACAGTGGAGCGAGTTATAGCCTTATATCCACCAGATTGGTGAAGGAATTGGGGCTGAAAAGTACATCCCCAACTGAAGCACGAGTAAAAGACATTGCAGAATGGCTACTTAGTAATCCTAGGGATTCAACAGGTTTGACAACAAATAGTTTAGCTGATGCTAGTTATCCAAGTGTTGCTTCACTGGGTGAGGCAGTCTGTGGCATGGCCACGACAAGAATCAATCCAAAACATTTCCTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATTCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGACCATCATTCAAAGTTTTTCTTGAAGTAGTCAAAAGCAAAAGATTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAAATAATGATAAGAGATTCTTTCCAAGGCACTGAGATCACCGGTCCAAAGACTTCAAATTATGTGCAGAAAACTGACACTTCAACTGGAGTGATGGATGAACTTAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCTGATTTTTGGGGTTGATTCAGGTGGGGTAATCAATTGGTGGAATTCAAAGATTGCGAAACTGACAGGTCTACGAGGCAGTGAAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGATTCATGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGAGAGGAGAAAAAAAATGTAGAGTTTAAAATAAAGCACTTTGGGTTTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATACTTGCACTAGTAAGGACTACACAGATTCTGTTGTCGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGGTGGTGATTACAAAGCAATCGTGCAGAGTCTCAGTCTACTGATTCCATCCATATTTTCTTCTGTTGAGAGTGCTTCCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAAGTGGTTGGAAAAGAAATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTTGTCGACTAAAAGAAATAGAGAATTTGTTGAGAGTTGTATAACAGCAAACAAGAGAATTGATGTTGGTGAGAATATACTTGGCTATTTTTGCTTCTTGCAGGTTGTAACGCCAGATCTGAATCAGTCATCTGAAAAACACGAGCCCATAGACAGAGAAAACATTTCTGAATCCAAAGAGTTAGCTTATATACTACAAGTGATTGAAACCATGCCTCTGGCTTGGAGCTTGAGCCCAGTAGAATTTGTGGAAGGGGAGATAGAAGAGAGTGACTTAACTCCCAATAAAGAGGGACTTGCAGAAGGGAGAGAGCTGCTGGAAGCATTGAAAGACATCAAAGATCATCTTCTCCAAGCTTATAGTTTTGAAAAAGAGATGACCAAAGTGTGGGAAGTTAATAGAACCAAAGAAGAAGGGAAGACATTGGAGGAGGATTTGCCACCACCCAAGCCTCCAGACTAG 2475 0.4448 MEKILNARVGRMEERMMAIESTMEEVTAEVRAITREFRQRSRNRDRSSKGRRNFVNAGRGPRLPENSREESEEDRGEVRRSRRKRVELPTFEGVDLMGWIAQAEKIFERQSATEKEKMKFVYRCMERGLASFWFRFWRKKTTHPTWKRFTDDLTRRFGGQHQDTVVEKLLAVRQKGSLDEDIQELESLVPRTSGKPYHSSLNVSVNLGASIINGGGAAGKGGTTWGRCNSSSGTVARTETYRGSSEVIVNSGGGQEDEEDEVEEGPEIEQKTMELSVLSAGGLTQSKTMKRQGWVQGKKGLVLIDSGASYSLISTRLVKELGLKSTSPTEARVKDIAEWLLSNPRDSTGLTTNSLADASYPSVASLGEAVCGMATTRINPKHFLFWFRSHTAKEVKWGGAKHHSEDRDDGGKMNPRPSFKVFLEVVKSKRLPWEVSEINAIHSLQIMIRDSFQGTEITGPKTSNYVQKTDTSTGVMDELSSVALEMVRLIETATVLIFGVDSGGVINWWNSKIAKLTGLRGSEAMGKSMVNEIIHADSCDTFKNTLSRALQGEEKKNVEFKIKHFGFQQQQKVVYLMVNTCTSKDYTDSVVGVCFVGQDITYEKMVQDKFIKLGGDYKAIVQSLSLLIPSIFSSVESASCSEWNAAMERLSGWKRNEVIGKLLPGEIFGSFLSTKRNREFVESCITANKRIDVGENILGYFCFLQVVTPDLNQSSEKHEPIDRENISESKELAYILQVIETMPLAWSLSPVEFVEGEIEESDLTPNKEGLAEGRELLEALKDIKDHLLQAYSFEKEMTKVWEVNRTKEEGKTLEEDLPPPKPPD 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01396 824 SUPERFAMILY PYP-like sensor domain (PAS domain) 488 596 IPR035965 -
Vimu10g01396 824 Pfam Phytochrome region 326 453 IPR013515 GO:0006355|GO:0009584
Vimu10g01396 824 MobiDBLite consensus disorder prediction 805 824 - -
Vimu10g01396 824 CDD PAS 493 600 IPR000014 -
Vimu10g01396 824 Gene3D PAS domain 479 612 - -
Vimu10g01396 824 MobiDBLite consensus disorder prediction 37 82 - -
Vimu10g01396 824 SUPERFAMILY GAF domain-like 326 452 - -
Vimu10g01396 824 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 302 313 IPR001969 GO:0004190|GO:0006508
Vimu10g01396 824 FunFam Phytochrome 478 610 - -
Vimu10g01396 824 ProSiteProfiles PAS repeat profile. 616 661 IPR000014 -
Vimu10g01396 824 PANTHER OS08G0260000 PROTEIN 259 680 - -
Vimu10g01396 824 SMART pas_2 615 689 IPR000014 -
Vimu10g01396 824 SMART pas_2 484 551 IPR000014 -
Vimu10g01396 824 Pfam PAS fold 485 600 IPR013767 GO:0006355
Vimu10g01396 824 Pfam PAS fold 616 669 IPR013767 GO:0006355
Vimu10g01396 824 Pfam Aspartyl protease 294 329 - -
Vimu10g01396 824 NCBIfam PAS domain S-box protein 489 608 IPR000014 -
Vimu10g01396 824 MobiDBLite consensus disorder prediction 37 52 - -
Vimu10g01396 824 MobiDBLite consensus disorder prediction 63 82 - -
Vimu10g01396 824 Gene3D - 315 455 IPR043150 -
Vimu10g01396 824 ProSiteProfiles PAC domain profile. 556 612 IPR000700 -
Vimu10g01396 824 Coils Coil 9 36 - -
Vimu10g01396 824 ProSiteProfiles PAS repeat profile. 482 553 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01396 Vimu-Chr10 14764730 14767204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01396 179 772 Histidine Kinase Gene Family AT2G18790 42.331 2.39e-155 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01396 K12123 - gmx:100808192 651.744