Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01388 ATGGGAGCTCCTGATCTCTCACATCACGTGTTCGAAGAAGGTCACGTCACTGCTGATTGGATTGCTGTGCATGCGCTCTCTCACCTTCTCTATCCTTCTAGTACTGTCCAATGTATTCCTCCTGCTTTTAGTGGTATTGTGGCCAGCATGGTTAATAAGAAAATCAATCTCAATGATTCAACTGGGCAGCAGTGGAAGGTTAAAGTTTCAGAAGTTAATGGTTCATTTGTTTTTGGGGAGGGATGGAGTCTTTTCTCATCAGGTCATGGGCTTAAAGTTGGCTATCTTTTGGTACTCAATTACATTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTCTTCCTAAAAAAAGAAATCAGAAGAAAAGAAGTAGGGGCAAAATTGGCTCACGAGTTAGAGATGGTATCTTGGTCAGACAAGAACTCGATGCGCCAAGGCAGTGCAGCGAGGATGACTTAGTAGTACCACAAAAGGCTAAAGAGAGTGGCCAAGATGTGCTCATACTAGATCACAGTGAAGAAGACCCATGTCATTCAAAAAGCCTAGAATTTGACCAGAGCCATGGGGATGATGGGACCATGAAAAGTCAGAACGGAGATTTAATAGTTTCTAATGTGGATTATGAATCTAATATCGTTGAAAACAATGCAATGATATGCAGTAAGGATACTATGCTTGAAGGGGTGTTGAGTACTGAAGTTGCCTTGGATATATCTGAACTACGAATATATGGAAGAAGTGCTTCTCTAGAGGCAGACACATATACATATGACAAGACTTTTAATTCGAAGATTGAAGAGAACAAAGCCATCTTGTCCAACAGGGAAGCTCAAGAGTGCCAATTTTCCAAGGGCTTAGGTGAAATGAAGAAATTGTCTGTGGACATGACTCCCAACTTGGACAGCTCCATGGATGAATTTCATTTAACAGGTGAAGTGTCTAAAAAGTTGAAGAAAGAGCTTGTAACTCTCAATGAAATGGAAGCAAAAGGATTGCCCAAGGAAATCAACGGACTGTTGGACTCTGACATATTTAATGAAGATAATGCGAGTCACTTAAAAACTACACACTTCTCCTGTGTGGAATTGCCCTCATGCCTGCCTTTGATTCGCAAGGTAAAGGTAGATCAGCAAAGGAAGATGTTAGTATTTCTTCGGGACCCACTGAGGAGATTGTGGCCGGTCTATTATCATGAAAAACCACATTTGAAATTACTGGCACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAGCCAAAAGATGAGTGTATTTTTGAGGCTGAGGTTGACCCTGAGTGCAAGTCTAAACGTATCTTATCTGTTCAGATAGTCCACAACAAGTGA 1374 0.4098 MGAPDLSHHVFEEGHVTADWIAVHALSHLLYPSSTVQCIPPAFSGIVASMVNKKINLNDSTGQQWKVKVSEVNGSFVFGEGWSLFSSGHGLKVGYLLVLNYIKDLHFDVKIYDTSACEKLGLPKKRNQKKRSRGKIGSRVRDGILVRQELDAPRQCSEDDLVVPQKAKESGQDVLILDHSEEDPCHSKSLEFDQSHGDDGTMKSQNGDLIVSNVDYESNIVENNAMICSKDTMLEGVLSTEVALDISELRIYGRSASLEADTYTYDKTFNSKIEENKAILSNREAQECQFSKGLGEMKKLSVDMTPNLDSSMDEFHLTGEVSKKLKKELVTLNEMEAKGLPKEINGLLDSDIFNEDNASHLKTTHFSCVELPSCLPLIRKVKVDQQRKMLVFLRDPLRRLWPVYYHEKPHLKLLAHGWLDFSRANNIQPKDECIFEAEVDPECKSKRILSVQIVHNK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01388 457 Gene3D - 359 457 IPR015300 -
Vimu10g01388 457 Gene3D - 24 117 IPR015300 -
Vimu10g01388 457 SUPERFAMILY DNA-binding pseudobarrel domain 37 119 IPR015300 -
Vimu10g01388 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 454 IPR044837 -
Vimu10g01388 457 MobiDBLite consensus disorder prediction 184 198 - -
Vimu10g01388 457 MobiDBLite consensus disorder prediction 184 203 - -
Vimu10g01388 457 Pfam B3 DNA binding domain 39 113 IPR003340 GO:0003677
Vimu10g01388 457 CDD B3_DNA 391 436 IPR003340 GO:0003677
Vimu10g01388 457 CDD B3_DNA 53 113 IPR003340 GO:0003677
Vimu10g01388 457 SUPERFAMILY DNA-binding pseudobarrel domain 375 437 IPR015300 -
Vimu10g01388 457 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Vimu10g01388 457 SMART B3_2 26 115 IPR003340 GO:0003677
Vimu10g01388 457 ProSiteProfiles B3 DNA-binding domain profile. 391 457 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01388 23 118 B3 DNA Binding Superfamily AT4G01580 30.303 6.58e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu10g01388 B3 7.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01388 - - vra:106761496 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01388 10 14720334 14723552 Vimu10g01388 10 14720334 14723552 ECH