Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01382 ATGGGTAAACCTTTGTCCCGAACACTCGATCACGATCCTCAACAGTCAGATCTCAATCATGTTGCCCAAGATGATGATGCACTTAACAGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGTGAGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTAGGAAGTTGAGTGATGAAGGTGCTGCACCTGAAGGTGGTAGGGGTGAAGGGAGTGAGGATGATGGTGGTGGTGGTGGTGATGATGTTGTTGGTGTTGTTGATGATGATGATTGCAATGGAGGGGACGAAGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGGGCGGAGATGTGGAGGGAGTAGATATCAGGGATGAGAGGAGCAGTGGGAGAGCTCAACAGTACCCGTTGAGGCCAGAGGCTGAAGACTGTGCATATTATCTCAAAACTGGAAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCGCTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGGTATTGGCATGTCTTTCTATATGTCGTGCGTTTGCCATGAACAAAGATTCTGTCATGGTGGATCATGGCATATTAGTTTGGCAGATTTCTTTCTCTGATGCTATACTACTACATTATTATTTAAGATCTGGTGGGTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACAAAAGGGAAAAGTGTTCATCCGCAAACCCAATTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGAAATGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATATGATAATGGAAGTTCTGTTTCATTACAAGGTGTATCGCAGTCATCTATATCCTCGTGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCAGCTAATACAGGGGTTTCTCCTCAAAGTTCTGAATGGGACGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGCATCATCAACAACAAGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAGGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGCCTTAGTAACAAGGGTCTACCTTTGAGGCCGGACCAGAATGTCTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTACGAATGGACTTGATCAACAATCCTCGTACTCAAATTCTGCTAGTGTTAATGTGGCTGAAAATGGAGGTGTCAGTAGTGATGGGAATCAATAG 1536 0.4342 MGKPLSRTLDHDPQQSDLNHVAQDDDALNRELQSKLDLKDVSESEDKGSNLEDGGRKLSDEGAAPEGGRGEGSEDDGGGGGDDVVGVVDDDDCNGGDEGCDWIENVNESESDKVGGDVEGVDIRDERSSGRAQQYPLRPEAEDCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKVLACLSICRAFAMNKDSVMVDHGILVWQISFSDAILLHYYLRSGGCKFGKACKFNHKREKCSSANPIAELNFLGLPIRVGEKECHYYMRNGSCKFGANCKFNHPDPTAGGGDSPSRYDNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSANTGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQQQVQVEEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRIARLPPCSLSNKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTTNGLDQQSSYSNSASVNVAENGGVSSDGNQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01382 511 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vimu10g01382 511 SMART c3hfinal6 228 250 IPR000571 GO:0046872
Vimu10g01382 511 SMART c3hfinal6 272 297 IPR000571 GO:0046872
Vimu10g01382 511 SMART c3hfinal6 451 478 IPR000571 GO:0046872
Vimu10g01382 511 SMART c3hfinal6 405 432 IPR000571 GO:0046872
Vimu10g01382 511 ProSiteProfiles Zinc finger C3H1-type profile. 451 479 IPR000571 GO:0046872
Vimu10g01382 511 ProSiteProfiles Zinc finger C3H1-type profile. 405 433 IPR000571 GO:0046872
Vimu10g01382 511 MobiDBLite consensus disorder prediction 480 511 - -
Vimu10g01382 511 Gene3D - 448 499 - -
Vimu10g01382 511 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vimu10g01382 511 MobiDBLite consensus disorder prediction 13 76 - -
Vimu10g01382 511 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Vimu10g01382 511 Gene3D - 117 175 - -
Vimu10g01382 511 Gene3D - 361 440 - -
Vimu10g01382 511 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Vimu10g01382 511 MobiDBLite consensus disorder prediction 479 511 - -
Vimu10g01382 511 SUPERFAMILY CCCH zinc finger 449 476 IPR036855 GO:0046872
Vimu10g01382 511 PANTHER PROTEIN PHOSPHATASE RELATED 23 490 - -
Vimu10g01382 511 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Vimu10g01382 511 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872
Vimu10g01382 511 Gene3D - 228 305 - -
Vimu10g01382 511 MobiDBLite consensus disorder prediction 1 99 - -
Vimu10g01382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 407 432 IPR000571 GO:0046872
Vimu10g01382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 296 IPR000571 GO:0046872
Vimu10g01382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Vimu10g01382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 454 478 IPR000571 GO:0046872
Vimu10g01382 511 SUPERFAMILY CCCH zinc finger 410 434 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01382 Vimu-Chr10 14634059 14638878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01382 401 500 C2H2 Transcription Factor Family AT3G02830 47.573 8.92e-23 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu10g01382 zf-CCCH 7.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01382 - - gmx:100809906 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00563 7 5710515 5714492 Vimu10g01382 10 14634059 14638878 ECH
Vimu10g01382 10 14634059 14638878 Vimu10g01382 10 14634059 14638878 ECH
Vimu7g00563 7 5710515 5714492 Vimu10g01382 10 14634059 14638878 PCT