Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01381 ATGGCAGAGAAGTTCCCTTCCTCTGGAAACAGGGGAAGAGACGCAAACACGAGGTGTGAGCTCGCAGAGGCTTCAATGAGAGCCACGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCTGAGGGTAGCGCCGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCACCGGAGTACCGGCCGACTGCCGCAGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTCCTCCAAAGAAAACCGCCATCGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGGCCTCGCCCCGTGCAGCGCCCAGTCTGGCAGAGCGGTGACCACTATACCTTCACGGAGTTCGAGTTCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAAGGTCCGAGTCCAGGCCCAGGTCTGACCCCACTTGAGACCGAAACGCTATTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCCAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGGCACACAGGGGATCCCACCTCCCTTGCGGACACTCCTTGGAACATGCGAGCTGTTTCTCGGGCCACGGGCTCACTCTTGCGCTTCATGAAAGAGGAGATTCCCGGAGTTACTTCTCCCATGGTCTATGTTGCCATGCTCTTCAGCTGGTTTGCGTGGCATGTCGAGGACCACGACTTGCATAGCCTGAACTACCTCCACATGGGTGCCGGCAAAACCTGGTACGGCGTCCCTCGAGATGCTGCTGTTGCTTTTGAGGAGGTTGTTAGGGTTCACGGTTACGGTGGAGAAATTAATCCTCTCGTTACATTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCTGAAGTATTTCTTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAACTGTGGAGAGGCAGCGAACATTGCTACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCAAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGCTACAGAACAATGACCTGCTTCATATACTGGGGAAAGGATCTGCTGTAGTACTTCTACCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGATTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAACTTTCTATTCTGTGAAAGACAAGTTTAGTACGATGTATGAAAGGAATAGGGTTTCCTATTTTGATGTAAATGGTAGCTTAAACTCTTCAACTTCTAAGCCACTTCAAAGGGACACCGAGGGAGGAACTAGTAAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTGAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGATCCGGCTGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTGTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAACTTACTACTGCCCCTGAAGAAGCAACTATTCCTTCTATTCTTAACATACTTGTTTATCTATCTTCTGTTCTAAGTTTCTCTTATGGTCCTATTGGTGTTTATTGGGGTCCAAAAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGGTATGCTTTAAGTATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTTCAGTTGATGGTCATGAAACGAATGCGCTGATCTCTGCTTCAGAAAGTTTACTTACTCATACTCAAGATTCCCATGCTAGTCCCGTGTCTGCACTTGATAGCGGAGATAATATTACTTTGATGAGTGCCAGTTGTGAGGGTTTAATGCATCGTAGATTTGAGGGTAATTTAAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATATGAAGACAGTGCCTAATTCCACCTCCAATTGTTCCCAAGATGCCAATGATGCTGAAAGGTCATTGTCTAAAATGTCTATGGTTCCCTTTGATAATAAAAATGCTTCCATGGTGTTACAGTCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCACGCTGCAGAAGCAGAGAAGCAACTTCGCCCAATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCGGAAGATTTGGGGATTGATTACACATGGAAGAGTATTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTTGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGAATCAATCTCTTTTATAGTGCACATCTTAGTCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTGTGCATTTGGTTGTAGCTCTCCAGCTAGCTCATCCGAAGAGCCAAAGGTCTATCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAATCTTACTTGGGTGGATATCACCTGAGGAGAGAATTGAGAGATCAGAAAGTACCCCTAAAGGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAATCGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGTGTTCATACAAGTAAGAAAGCCAGGAATGTTGGGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTGCATATAATCATAGAAAACCTATTAGCAAAGAAACAAACTTTACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATGATGTGGTTTCAGATGATACAGGGGACTGTGATTCTGATTGGCAGCAAAGGGAAGAACATAGCAGCAAGGACAATGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTGAAGGCAAGCATGACAAATTCATCAGTGAAGAAGATATAATTTCTGATGACCAAATGCAGAGTTGTTTTCAAAAGCGGCAAAGGAGAACTCCTAAAAGCAGGCAAGCTAAGTATCTGACTGGAAAAAGTATAATATCCGACGACCAGCTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCTTCAGATGACCAATTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGCAGAGGAAGATGAAATGTCTGGAGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAAACAAAGGCATTAATAGAGAAGATAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCAAAGCAGCAAAGAAGAATTCCGAAGAGCAGGCAAAACAGATACCCTGATAAAGAAGTTATGGATGACTCGGCTGAAAACAATTCTCGTCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGACGAAGATGATTTGAATTCAGATGATGAAATGGAAGATGATCAGAAGCTGAGGAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGCCAATTCCGTCCATGCAAAAAACCAGGCATCTCGGTCCATAAAACGGGGATCTCGGGTTCTTGTGAAATCAAAGACACCTCAGCAAATAAAACCGCGGAATAAGCAATCCACTAACTCCCGAGAGTTTAGTTTACTTATGGAAGACGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGGGACTGAAGGGAAATTGAAAGAGAAGCAAACAAAAAGGAAGAAGGTGAAGAATGATTCAACAGCAAAGGTTTCAGCTGGTCATGTCAAAGGAAAGGATGAGGAAGCAGATTATCAGTGTGATATGGATGGGTGCAGTATGAGCTTTGGGTCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGAAGAGTTCATGAGGATGAGAGACCCTTGAAGTGCCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTGTGTGCAGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCGGCGAAGAAGAGTCGTCAATAG 4884 0.4472 MAEKFPSSGNRGRDANTRCELAEASMRATEKKSGIMGGGSEGSADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPPPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFEFKAKSFEKAYLKRHTRKGPSPGPGLTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFLSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKDFVSDDLVFNRSHGIKQEKTFYSVKDKFSTMYERNRVSYFDVNGSLNSSTSKPLQRDTEGGTSKEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLMSADCSFCNDWVVGSGVSNSKLTTAPEEATIPSILNILVYLSSVLSFSYGPIGVYWGPKGWMKKNVQDGMQDVSVQSSRYALSIESEKGNTALALLASAYGNSSDSEEDQISVDGHETNALISASESLLTHTQDSHASPVSALDSGDNITLMSASCEGLMHRRFEGNLSHQSLDHSLKKQDYNITSGVTFENMKTVPNSTSNCSQDANDAERSLSKMSMVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKVVAEDLGIDYTWKSIAYRHASKEDEERIQLALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSSEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKILLGWISPEERIERSESTPKGETTSRKSGKKRKSTAENGRTRKGSYAKKNVVSYNSTEDKPNSQPRSVHTSKKARNVGRDRAALKGDTSAYNHRKPISKETNFTESDAVSDDSLDDEDDHMQHGRNFDIDNDVVSDDTGDCDSDWQQREEHSSKDNEDMERDAISEDSEGKHDKFISEEDIISDDQMQSCFQKRQRRTPKSRQAKYLTGKSIISDDQLELKMQKQQRRNPKSRQAKYLNEEDIASDDQLEGHYRRYQRRNPKGRQAKCVAEEDEMSGDQLEDHCQKLQTSFSRKKQNKGINREDKYVMSDDQLEDHFPKQQRRIPKSRQNRYPDKEVMDDSAENNSRLLHRTPKRKQAKCMDEDDLNSDDEMEDDQKLRRTLRSKQSKPKTLQQMKQANSVHAKNQASRSIKRGSRVLVKSKTPQQIKPRNKQSTNSREFSLLMEDEEEGGPSTRLRKRATKAQGTEGKLKEKQTKRKKVKNDSTAKVSAGHVKGKDEEADYQCDMDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01381 1627 SUPERFAMILY Clavaminate synthase-like 217 404 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1082 1110 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 544 563 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1150 1190 - -
Vimu10g01381 1627 Pfam jmjN domain 57 90 IPR003349 -
Vimu10g01381 1627 ProSitePatterns Zinc finger C2H2 type domain signature. 1566 1588 IPR013087 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1450 1501 - -
Vimu10g01381 1627 SUPERFAMILY beta-beta-alpha zinc fingers 1582 1616 IPR036236 -
Vimu10g01381 1627 Coils Coil 1472 1492 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1242 1265 - -
Vimu10g01381 1627 SMART c2h2final6 1594 1620 IPR013087 -
Vimu10g01381 1627 SMART c2h2final6 1511 1533 IPR013087 -
Vimu10g01381 1627 SMART c2h2final6 1534 1558 IPR013087 -
Vimu10g01381 1627 SMART c2h2final6 1564 1588 IPR013087 -
Vimu10g01381 1627 Pfam JmjC domain, hydroxylase 250 368 IPR003347 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1396 1421 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1021 1501 - -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1021 1053 - -
Vimu10g01381 1627 SMART cupin_9 217 386 IPR003347 -
Vimu10g01381 1627 ProSiteProfiles Zinc finger C2H2 type domain profile. 1534 1563 IPR013087 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1428 1449 - -
Vimu10g01381 1627 ProSiteProfiles JmjC domain profile. 217 386 IPR003347 -
Vimu10g01381 1627 SMART JmjN_1 55 96 IPR003349 -
Vimu10g01381 1627 SUPERFAMILY beta-beta-alpha zinc fingers 1550 1592 IPR036236 -
Vimu10g01381 1627 Gene3D Classic Zinc Finger 1532 1618 - -
Vimu10g01381 1627 PANTHER LYSINE-SPECIFIC DEMETHYLASE 48 1560 - -
Vimu10g01381 1627 FunFam Probable lysine-specific demethylase ELF6 1561 1590 - -
Vimu10g01381 1627 Gene3D Cupin 49 390 - -
Vimu10g01381 1627 ProSitePatterns Zinc finger C2H2 type domain signature. 1596 1620 IPR013087 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1305 1372 - -
Vimu10g01381 1627 FunFam Probable lysine-specific demethylase ELF6 1591 1620 - -
Vimu10g01381 1627 FunFam Probable lysine-specific demethylase ELF6 49 390 - -
Vimu10g01381 1627 ProSiteProfiles Zinc finger C2H2 type domain profile. 1564 1593 IPR013087 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1125 1141 - -
Vimu10g01381 1627 ProSiteProfiles Zinc finger C2H2 type domain profile. 1594 1625 IPR013087 -
Vimu10g01381 1627 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vimu10g01381 1627 ProSitePatterns Zinc finger C2H2 type domain signature. 1536 1558 IPR013087 -
Vimu10g01381 1627 MobiDBLite consensus disorder prediction 1057 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01381 Vimu-Chr10 14607812 14617477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01381 1418 1625 C2H2 Transcription Factor Family AT3G48430 55.357 8.74e-68 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu10g01381 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01381 - - gmx:100775271 2553.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01381 10 14607812 14617477 Vimu10g01381 10 14607812 14617477 ECH
Vimu10g01381 10 14607812 14617477 Vimu7g00565 7 5731853 5732526 PCT