Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01373 ATGATGGAAGGGCAGCGGCATTCGGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTCAACTAATTCTATGAGCAAGCTCTGTTATTTGGTCGATAATGTGCATTGGGAAAATGGTTCTGTTAATGACATTTCCCTTAGGTTTTCTGATGCTGCTAAGCCATGTGATTCTGATGATAATGCTGCTCTCAGATCAAGAAATTTAGGTCTCAAGGCACAAAGGGAGCAGAAAGATGCTGATTCTGCATTCAACTCAAGGCTGAAGCCTAGTGGAATTTCTTGTCAGGGTCTCCAACAAGATGGCGAACCAGTTTACTCTAAGCGTAATCTGCAATGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTGGTAGCAACCATGGGGGTAAAGGATTGAACTTAACTTCAGTTGTGCATCCAAGTAATAATGATTTCAAGGATGGGGATTCATGTTATGTAGCAACTGCTAGATCATCTCAGTTAGGGAGAATAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTGTTGATGGCAATGTTAGTCCATACCCTTCTGGTTATGATGCTTTCTCACCCTATAGTGGTTCAGTAGGCATAAATCAAGGTATGGATAGTTTAGATGATAATGATAATGGGTGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCCAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCTCACCGTGTTGATGAGTCAGATCTTCATGCACCCAGAAGCATGAGAAACAATGGTGGCGGGATTGGTCTGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAAACATTTAGTGATTTGGTTGGACAAAATGTGGTAGTAAGGTCTCTGTTGGGGGCCATCTCCAGAGGAAGGATAACATCATTTTATCTGTTCTATGGTCCACGTGGAACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTTTCTTTTGAGGAACAGAGGCCATGTGGCCTATGCAGAGAATGTATTGTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGCAGCGACCAGGTTAAGTCCCTTGTTAAGAGTGCAAGCACCCCCCCAGTCTCCTCACGTTTCAAGGTTTTCATTATTGATGAGTGCCAGCTATTGAATGGGGAAACATGGGCAAGCATTTCCAATAGCCTTGACAACCTTTCTCAACATGTGGTTTTCGTGATGATAACTCCTGATTTGGATAAGCTTCCTCGGAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGACGCTGACATTGTATGCAGATTGCAAAGTATTTGTGCCGAAGAAGCTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCTTGTGGGTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTGGGTAAAAAGATCAATATCTCTTTAGCTTATGAGCTTACTGGGATCGTTTCAGATGATGAATTACTCGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAATTAGCAAATCTCATTATGGACATACTTGCAGGGAAATCTGAAAATGGTGGTCCAGAAGTCAGAAGTAGATTTTATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCGTTGAAAATACTTTCTGAAACTGAGAAGCAGCTGAGAATTTCTAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGCTAAGCTCTGCAGATTATCAATGTGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTGAATGCAATGGAGGTGAGTTTAACCCTTTTGCTTGGCCTGTTACATTATTTTCAATTCCTTTTCTCCTTGGTGTGTTGGATGGGATTGGCAGAATGGAGTGGCTTTTTCAAAACTTGGAGCATTTTGCTAACAAGTCATACAGATTAGGAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTCTTGCTATTGCCGAGTTAGAGTTCCACCATAGTAACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCTTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCTAAGTATTGCAAACTGAAGAGATCAACTTTCAGTTTCTTCACTTGTTCCCGCAGAAATCGGCAACAGAAGTCACTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGGTGATTGCGCCTCAGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAGGGGAAAGATTTTTGAATAGATCATTTCAAGAGAATACGAAGACATCATGTGCTGAAGTTGATTCTTCCAAGGAAAAGGGTTGCAACGGTGCTCATCTAGATCCATCAATCCTCGATTCAGATAATGACCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCGTATTCATCCAAGTTGTCTTTTCCAGGCATTCAACAACAGAAAGATTTTGTTTTGTCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAATGAACCCTGCATTTTTTCTGGTAGTTGTAAGAATTGCACCAAAGCTTCTTAG 2952 0.4109 MMEGQRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCYLVDNVHWENGSVNDISLRFSDAAKPCDSDDNAALRSRNLGLKAQREQKDADSAFNSRLKPSGISCQGLQQDGEPVYSKRNLQCISGNKSPSESCGSNHGGKGLNLTSVVHPSNNDFKDGDSCYVATARSSQLGRIDCSKSAKKSLRKNQVKPSELVGSVDGNVSPYPSGYDAFSPYSGSVGINQGMDSLDDNDNGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDESDLHAPRSMRNNGGGIGLNLETPRSLSMKFRPKTFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIVFFSGRSKDFKEVDSVRINRSDQVKSLVKSASTPPVSSRFKVFIIDECQLLNGETWASISNSLDNLSQHVVFVMITPDLDKLPRSVVSRAQRYHFPKVKDADIVCRLQSICAEEALDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKSENGGPEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSADYQCVDANDTKFSLRGECNGGEFNPFAWPVTLFSIPFLLGVLDGIGRMEWLFQNLEHFANKSYRLGVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSLAIAELEFHHSNHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYCKLKRSTFSFFTCSRRNRQQKSLSSNEQGSESDYGDCASENPMMKDKTSTSDCGMDAVTALRSCEGNLLSSGERFLNRSFQENTKTSCAEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKLSFPGIQQQKDFVLSVPKCTCSGTYTYANEPCIFSGSCKNCTKAS 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01373 983 Gene3D - 530 642 - -
Vimu10g01373 983 CDD HLD_clamp_pol_III_gamma_tau 466 529 IPR045085 -
Vimu10g01373 983 SUPERFAMILY post-AAA+ oligomerization domain-like 536 639 IPR008921 GO:0003677|GO:0006260
Vimu10g01373 983 Gene3D - 287 464 IPR027417 -
Vimu10g01373 983 MobiDBLite consensus disorder prediction 823 843 - -
Vimu10g01373 983 Coils Coil 605 628 - -
Vimu10g01373 983 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 294 720 - -
Vimu10g01373 983 Gene3D - 467 529 - -
Vimu10g01373 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 515 IPR027417 -
Vimu10g01373 983 MobiDBLite consensus disorder prediction 823 837 - -
Vimu10g01373 983 FunFam DNA polymerase III subunit gamma/tau 467 529 - -
Vimu10g01373 983 FunFam Protein STICHEL-like 1 isoform C 530 643 - -
Vimu10g01373 983 NCBIfam DNA polymerase III subunit gamma/tau 293 639 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vimu10g01373 983 Pfam DNA polymerase III, delta subunit 309 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01373 Vimu-Chr10 14484852 14488594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01373 297 581 Core DNA Replication Machinery Family AT1G21690 25.606 3.30e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01373 - - gmx:100812040 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01373 10 14484852 14488594 Vimu10g01373 10 14484852 14488594 ECH
Vimu7g00569 7 5757803 5762751 Vimu10g01373 10 14484852 14488594 PCT