Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01365 ATGACAACTTTGCTTTTCTTCTTCTTCTTTCTCCTCCCTCCTACCCTTTTATCTTCACCAGTTCAAAATCCTGAAGAGGTTGTTCAAGAGGTCAACAGGAAAATCAACGCCTCCATAGCTAGGCCTAGGAGGAGCTTGGGCTATCTTTCATGCGGCAGTGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGCAAAAGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGATGGGAAGATCTACGTGGTGGACGACGCCGGCGACGACGACCCAGTGAACCCGAAGCCAGGGACGCTCCGCCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCCCGCGACATGGTGATCCAACTGAAGGAGGAGCTTCTGATGAACTCCTTCAAGACAATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGTCGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAATGCCATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCGATCTTCGGAGGAAGTCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAACGACGGGTTGATCGACGCCATCCATGGGTCCACCGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTGATGCTCTTAGGTCACAGTGACGCTTACACTCAGGACAAGGACATGCAAGTCACTATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTTGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGGAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAGCGTGAAGATGCGGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGATATGTTAGTAAATGGTGCATTTTTCACTGCTTCTGGTGCTGGAGCCTCCTCAAGTTATGCAAGGGCTTCAAGCCTAAGTGCAAGACCATCTTCACTTGTTGGTTCCATTACAACAGGTGCTGGTGCACTTTCCTGCAAGAAAGGAGTGGGAGAATGGTTGATTGCAACAAGACATGCCCTTTCCATTGCAGGAGTTAAATTGGATATGGAGGCAAAGATAGTGGATCTTCTTTTGACGGTGGCATTTGATGTGATTGTAGCTATTTGGTAA 1326 0.5219 MTTLLFFFFFLLPPTLLSSPVQNPEEVVQEVNRKINASIARPRRSLGYLSCGSGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVSNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGVGEWLIATRHALSIAGVKLDMEAKIVDLLLTVAFDVIVAIW 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01365 441 FunFam Pectate lyase 54 396 - -
Vimu10g01365 441 Pfam Pectate lyase 140 320 IPR002022 -
Vimu10g01365 441 SUPERFAMILY Pectin lyase-like 55 394 IPR011050 -
Vimu10g01365 441 SMART amb_all 129 326 IPR002022 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vimu10g01365 441 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vimu10g01365 441 PANTHER PECTATE LYASE 18-RELATED 21 400 IPR045032 GO:0030570
Vimu10g01365 441 Gene3D - 54 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01365 Vimu-Chr10 14359307 14362494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01365 4 400 Polysaccharide Lyase AT5G63180 80.451 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01365 K01728 - gmx:100814679 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01365 10 14359307 14362494 Vimu10g01365 10 14359307 14362494 ECH
Vimu7g00570 7 5781651 5783686 Vimu10g01365 10 14359307 14362494 ECH
Vimu6g01566 6 14595326 14598060 Vimu10g01365 10 14359307 14362494 ECH
Vimu10g01365 10 14359307 14362494 Vimu7g00570 7 5781651 5783686 ECH
Vimu7g00570 7 5781651 5783686 Vimu10g01365 10 14359307 14362494 PCT