Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01363 ATGACAGAGAGAAGAGATTGGGAATATAATCAAACACCACCACTCCTGCAGAGAATCAATCAAACAGAAAACAACTTCATCGAAATCAGAAAAAGGGGAGGGAAGGAAGCTTCCTCCTTTGCCTCGAATCAGAACGAAGAGAAGAAGAGGAACAAGAACCCTAGGGGCTATTACCTCGAACTGAAGCCGAACGGTCCTATTGCCTTTGTCCCCAGACAACCGAGACATATTAGTGGACAAAATGGACTTGGAACGTTCGCCCCCAAACCAAAACCTGCTTCAATCAGTGGCGAGAGTCTGAACTCAACAAAACCTAATACTTATATTAAACATATGGATTCCCCAACCCTTCTCTTCCCTCAACCCGATCTCTATTTACAGACTCGCGCTGGCAACCGCATTCCAGCGCACGCTACCATTCTGGCTTCTGCATCCCCGGTTCTACAAAACGTGATAAAGTCCTCCAACCGAATCGTCAAAATCCACGGCGTTCCAGACGCTGCCGTCACGGCTTTCGTAGCGTTCCTCTACTATGCCAGGTGCACGGAGGAGGATATGGATAAGTACGGAATGCACCTTCTGGTACTGTCGCACGTGTACATGGTGAAGCATCTGAAACAGCGGTGCATCAAGGGACTGGGCGACCGCGTCAGTACGGAGAACGTAGTGGACGTGTTGCAGCTGTCGCGGCTCTGCGACGCGCCGGATCTCTACCTCAAGTGTGCCAGGCACCTCACGAACCGTTTCAAAGCGGTGAAGGAAACCGAGGGATGGAGATTCTTGCAGAACCACGACCCCTGCCTAGAGCTTGAGATTCTCTGTTTCATGGAAGAACATGAAAAGGTAATGGTAACGATCACTTATCGATGTGATGTGAGATCTGGAAGAAGAATCAGTGTAGTGGTTAATTGGTTGTGTTTTTGTGAACAGAGAAAGAGGAAGGCGAGGAAGAGGAGGGAGGATGGTAGGTTATTTACGGAATTGAGCGAAGCGATGGTATGTCTGGAGCACATATGCACGGAGGGGTGCACGGAGGTGTGGCCGTTTGATGTGGAGGTCAGGCGAGAGAGAGAACCGTGTTCAATGTTCGGCACGTGTCAGGGTATGCAAAATTTGATTCGACACTTCGCCACCTGCGAGAGCGTTAAGGGACGGTGTTTACGGTGTAAGCGCATGTGGCAACTCTTCAGACTTCATTCCTCTATTTGCCTGCGACACGATACCTGCAAGGTTCCTCTGTGCAGTCAAATCAGATTAAAAATGGAGAAAGAGAAGAGGAAAGGTGACGCAAGGTGGGAACTACTAGTGAGGAAGGTGGCCTCGGCCAAAGCCATGTCTTCCTTGGCACTGCCAAAAAGGAAGATGGTTGAGGAAATTAGACCAAAGGTACCATAA 1395 0.4939 MTERRDWEYNQTPPLLQRINQTENNFIEIRKRGGKEASSFASNQNEEKKRNKNPRGYYLELKPNGPIAFVPRQPRHISGQNGLGTFAPKPKPASISGESLNSTKPNTYIKHMDSPTLLFPQPDLYLQTRAGNRIPAHATILASASPVLQNVIKSSNRIVKIHGVPDAAVTAFVAFLYYARCTEEDMDKYGMHLLVLSHVYMVKHLKQRCIKGLGDRVSTENVVDVLQLSRLCDAPDLYLKCARHLTNRFKAVKETEGWRFLQNHDPCLELEILCFMEEHEKVMVTITYRCDVRSGRRISVVVNWLCFCEQRKRKARKRREDGRLFTELSEAMVCLEHICTEGCTEVWPFDVEVRREREPCSMFGTCQGMQNLIRHFATCESVKGRCLRCKRMWQLFRLHSSICLRHDTCKVPLCSQIRLKMEKEKRKGDARWELLVRKVASAKAMSSLALPKRKMVEEIRPKVP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01363 464 ProSiteProfiles BTB domain profile. 122 185 IPR000210 GO:0005515
Vimu10g01363 464 FunFam BTB/POZ and TAZ domain-containing protein 2 218 284 - -
Vimu10g01363 464 Pfam BTB/POZ domain 122 211 IPR000210 GO:0005515
Vimu10g01363 464 SUPERFAMILY POZ domain 123 214 IPR011333 -
Vimu10g01363 464 MobiDBLite consensus disorder prediction 42 56 - -
Vimu10g01363 464 SMART TAZ_2 322 415 IPR000197 -
Vimu10g01363 464 MobiDBLite consensus disorder prediction 32 56 - -
Vimu10g01363 464 Gene3D - 217 289 - -
Vimu10g01363 464 FunFam BTB/POZ and TAZ domain-containing protein 2 319 444 - -
Vimu10g01363 464 SUPERFAMILY TAZ domain 323 423 IPR035898 -
Vimu10g01363 464 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 105 454 IPR044513 -
Vimu10g01363 464 Pfam TAZ zinc finger 329 414 IPR000197 -
Vimu10g01363 464 Gene3D Potassium Channel Kv1.1; Chain A 112 212 IPR011333 -
Vimu10g01363 464 Gene3D TAZ domain 320 450 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01363 Vimu-Chr10 14341051 14346362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vimu10g01363 BTB 5e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01363 - - pvu:PHAVU_009G170600g 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01363 10 14341051 14346362 Vimu10g01363 10 14341051 14346362 ECH
Vimu7g00571 7 5808311 5811530 Vimu10g01363 10 14341051 14346362 PCT