Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01350 ATGGTTGCCAAAACTCGCTTATTGCTTCTTTCACTGTTTTTCTTCTTAATCTCCATCCACGCCAAGCTCGAACTCTACCCCTCAGACTTCAAGGCACTCTTGGCTCTGCGAAAGGACTTCGGAGTCAACGGTCAACTCGACCTAAACGAAGCATGTTACACGGAGGGTGTCTTCTGCGAGCGAAGGCTCTCCACCAAGGAAACCTACGTCCTCCGAATAACCAGATTGGTCTTCAAATCAAAGCATCTCAAAGGTGTCTTGTCCCCTGCAATAGGACGCCTCACCGAGCTCAAACAACTCCTTCTCTCCGACAACCATCTCGTTGACCGCCTCCCTCCCCAAATCGTTGACTGCCGTAAGCTCGAAATCCTCGACCTTTCCAACAACCTCTTCTCTGGGGAGGTCCCCTCCGAACTCTCCTCTCTCACGCGCCTTCGCGCGTTGGACATATCCTCCAACCAATTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGGGTGCCTTCTTCCGTCCGCTCCTTCCGCAACCTCCGCCAATTCAACTTCTCCGGCAACAGCTTCCTCGAACCCTCTCTCCACTCCTCATCAGACCCCGTTCTCTCCAGACGTTTCCTCTCGGACGATGGGGATGCACCTTCTCCTGCGCCTGTCCCAAGCAAGAGAAACTCCCAAGGCTCTAATGTTTCCCCTGCATCGGCACCTGGTCCTTCACCTAACCATCGTAAACACAAGCACACTAAGAGAAAACTCCTAGGGTGGATTCTCGGGTTTTTGGCAGGGGCACTGGCTGGAACCTTATCAGGGTTCGTGTTTTCTCTGTTGTTCAAACTGGCTTTGGCGTTGATCAAAGGAAGAGGAAAGAGAGCGGGTCCTGATATTTTTAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAGGAAGACGGACTCGCTTCGATGGAAGTCATTGGACGCGGTGGCTGTGGAGAGGTTTACAAGGCTGAGTTACCAGGAAGCAATGGCAAAATGATTGCTATAAAGAAAGTTATTCAACCTCCCAAAGATGCTGCTGAATTAGCAGAGGAAGATAGCAAGGCTATGCATAAGAAAATGAGGCAAATTCGGTCTGAGATTAACACTGTGGGACAAATTAGACACCGAAACCTTCTGCCTCTGTTAGCGCATGTTTCTAGGCCTGATTGCCACTACCTCGTTTATGAATTCATGAAGAATGGTAGCTTGCAGGACTTGCTGCAAAAGGTTCAAAGGGGTGAGGGAGAGCTGGATTGGTTGGCACGGCATAGAATCATGCTTGGTGTTGCTGCTGGACTTGAATACCTTCACATGAATCACAGCCCTCGCATCATTCACAGAGATCTTAAGCCTGGAAATATTCTTCTTGATGATGACATGGAAGCACGCATAGCTGATTTTGGACTCGCTAAGGCAATGCCGGATTACAAGACTCACGTAACCACCTCCAATGTGGCTGGCACTGTGGGGTACATTGCTCCTGAGTATCACCAAATACTTAAGTTCACTGATAAGTGTGACATCTACAGCTTTGGAATAATCCTTGGGGTGTTGGTGACTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGACCACTGAAGAGGTTAGCTTGGTCAAGTGGTTGAGGAAGATTTTGAGTTCTGAGAATCCCAAGGAGGCTATTGATCCGAATCTGCTCGAAAATGGGTATGAGGAGCAGATGCTTCTGGTTGCGAAGATTGCATGCTTTTGCACCATGGATGATCCCAAAGAGAGGCCTAACGCAAAGGATGTTAGGTGCATGTTGTCTCAGATCAAACACTGA 1869 0.4933 MVAKTRLLLLSLFFFLISIHAKLELYPSDFKALLALRKDFGVNGQLDLNEACYTEGVFCERRLSTKETYVLRITRLVFKSKHLKGVLSPAIGRLTELKQLLLSDNHLVDRLPPQIVDCRKLEILDLSNNLFSGEVPSELSSLTRLRALDISSNQFSGNLNFLKYFPNLETLSVADNLFTGRVPSSVRSFRNLRQFNFSGNSFLEPSLHSSSDPVLSRRFLSDDGDAPSPAPVPSKRNSQGSNVSPASAPGPSPNHRKHKHTKRKLLGWILGFLAGALAGTLSGFVFSLLFKLALALIKGRGKRAGPDIFSPLIKKAEDLAFLEKEDGLASMEVIGRGGCGEVYKAELPGSNGKMIAIKKVIQPPKDAAELAEEDSKAMHKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDLLQKVQRGEGELDWLARHRIMLGVAAGLEYLHMNHSPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPDYKTHVTTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGIILGVLVTGKLPSDEFFQTTEEVSLVKWLRKILSSENPKEAIDPNLLENGYEEQMLLVAKIACFCTMDDPKERPNAKDVRCMLSQIKH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01350 622 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Vimu10g01350 622 FunFam Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 140 220 - -
Vimu10g01350 622 Gene3D Ribonuclease Inhibitor 140 212 IPR032675 -
Vimu10g01350 622 SMART serkin_6 328 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01350 622 Gene3D Phosphorylase Kinase; domain 1 317 419 - -
Vimu10g01350 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 64 621 - -
Vimu10g01350 622 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vimu10g01350 622 ProSiteProfiles Protein kinase domain profile. 328 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01350 622 SUPERFAMILY L domain-like 70 205 - -
Vimu10g01350 622 MobiDBLite consensus disorder prediction 232 249 - -
Vimu10g01350 622 MobiDBLite consensus disorder prediction 218 259 - -
Vimu10g01350 622 FunFam Leucine-rich repeat receptor-like protein kinase 420 622 - -
Vimu10g01350 622 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Vimu10g01350 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vimu10g01350 622 Pfam Protein kinase domain 331 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01350 622 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 315 419 - -
Vimu10g01350 622 Gene3D Transferase(Phosphotransferase) domain 1 420 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01350 Vimu-Chr10 14212171 14215397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01350 1 622 Receptor kinase-like Gene Family AT2G31880 62.243 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vimu10g01350 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01350 - - gmx:100811980 998.038