Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01344 ATGTCTATCACTGCCACTGCGTTCAAGTCTCTCACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCCTCTCTCTTTCACAACATAACCAAATCCCACGTTTTCTCACATCCTTCCAAACCCCTCACACTCCAATTCTCGTGCCTCAATTCCTCCCCCTCGCTCTCTCTCTCCCTCGCTGCACGAACCCACCGTTCCCCCGTCCTCACCCACGTCGCCCAAACTTCTGATTGGGCCCAGCAAGAAGACAACACCGCCACCTTCCAGGCCCAGGAGGAAGAACAAGAAGGGGGTGGCCTCCTCGATTGGGAGGTCGCGGGCGAAGGCGCCGAAGATGAGGGTTTCGTGGAACCACCGGAAGAGGCCAAGCTCTTCGTCGGGAACTTGCCTTACGACGTTGATAGTCAGAAATTGGCCATGCTATTCGAACAAGCCGGAGTCGTCGAAATCGCCGAGGTGATTTATGCCAGGGACACTGACCGGAGTCGTGGATTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGAGAAATTCAATAGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCTGCTCCGAGAGGAGCTCAACCTGAACGTCGACCTCGTCGTAACTTTGAGCCTGCCTTTTCTGTCTATGTTGGTAATTTGCCGTGGGATGTTGATGGTACCAGGTTGGAGCAAGTTTTCAGCGAGCATGGTAAGGTTTTGAGTGCTAGGGTAGTCTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTCACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTACTGCTCTTGATGGTCAGACTTTGGACGGAAGGACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTTTGA 912 0.5208 MSITATAFKSLTMADSCLLSSPSSLFHNITKSHVFSHPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVLTHVAQTSDWAQQEDNTATFQAQEEEQEGGGLLDWEVAGEGAEDEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGVVEIAEVIYARDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKAAPRGAQPERRPRRNFEPAFSVYVGNLPWDVDGTRLEQVFSEHGKVLSARVVYDRESGRSRGFGFVTMSDESEMNDAVTALDGQTLDGRTIRVNVAEDRPPRRSSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01344 303 CDD RRM2_NsCP33_like 219 293 - -
Vimu10g01344 303 PANTHER OS02G0815200 PROTEIN 23 300 - -
Vimu10g01344 303 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Vimu10g01344 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Vimu10g01344 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Vimu10g01344 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Vimu10g01344 303 SMART rrm1_1 218 291 IPR000504 GO:0003723
Vimu10g01344 303 SMART rrm1_1 123 196 IPR000504 GO:0003723
Vimu10g01344 303 SUPERFAMILY RNA-binding domain, RBD 118 211 IPR035979 GO:0003676
Vimu10g01344 303 Gene3D - 208 302 IPR012677 -
Vimu10g01344 303 Gene3D - 68 207 IPR012677 -
Vimu10g01344 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Vimu10g01344 303 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01344 Vimu-Chr10 14128818 14130807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01344 122 300 Eukaryotic Initiation Factors Gene Family AT3G16380 31.285 7.62e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01344 - - gmx:100810381 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00577 7 5867358 5869717 Vimu10g01344 10 14128818 14130807 ECH
Vimu10g01344 10 14128818 14130807 Vimu10g01344 10 14128818 14130807 ECH
Vimu7g00577 7 5867358 5869717 Vimu10g01344 10 14128818 14130807 PCT