Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01321 ATGGTCGGATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTCACTATCTTCACAGTAATAATCCTCCCATCATTCATCGTGACCTGAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCGTATGTCGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTGACATCTGTAAGTTAA 399 0.4311 MVGYRKKHKHVDLRAVKKWSKQILEGLHYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSVS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01321 132 FunFam WNK protein kinase 1 132 - -
Vimu10g01321 132 SUPERFAMILY Protein kinase-like (PK-like) 4 129 IPR011009 -
Vimu10g01321 132 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01321 132 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 130 - -
Vimu10g01321 132 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01321 132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Vimu10g01321 132 Pfam Protein kinase domain 7 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01321 132 Gene3D Transferase(Phosphotransferase) domain 1 2 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01321 Vimu-Chr10 13801460 13805582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01321 4 130 MAP Kinase Kinase Kinase AT3G48260 86.614 1.77e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu10g01321 Pkinase 3.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01321 K08867 - gmx:100272204 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01321 10 13801460 13805582 Vimu10g01321 10 13801460 13805582 ECH