Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01313 ATGAGTGCTCCCATGGACACAGAGCTCACAACCTACGAAAATGGCGCTGGTTCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTTCCTGATGAAGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAACGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGACCCATTCCTTGTTTCATGGAACCGCATAATTCTGTTACATGGACCTCCTGGAACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTTGAAAGCCTCGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTAGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTGAAATCATCTCCTAATGTGATAATTCTAACAACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGACTAATTTACAGGATTGCAAGAATATCATGCTTCCAAATTACGCATGTGCAAAGGAGAGGTTGAACGCTCCAGATTTGCACGAGGGTTCTACATTCATGCAACTGTGCAAGCACCTATTGGATACAGCGGAGGCTTGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAACTTCCATTTTTGGCACATGCTGCACTCTCAAATCCTTTTGATTGCGACCATATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGATCTGAGCTTCCTGATTAA 1164 0.4175 MSAPMDTELTTYENGAGSQHSLPEDKVLVPDEGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTNLQDCKNIMLPNYACAKERLNAPDLHEGSTFMQLCKHLLDTAEACEGMSGRSLRKLPFLAHAALSNPFDCDHIKFLCTMVETAKRERSELPD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01313 387 CDD RecA-like_Pch2-like 71 269 - -
Vimu10g01313 387 ProSitePatterns AAA-protein family signature. 243 262 IPR003960 GO:0005524|GO:0016887
Vimu10g01313 387 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 125 143 IPR001270 GO:0005524
Vimu10g01313 387 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 239 253 IPR001270 GO:0005524
Vimu10g01313 387 FunFam pachytene checkpoint protein 2 homolog 65 287 - -
Vimu10g01313 387 Pfam ATPase family associated with various cellular activities (AAA) 125 270 IPR003959 GO:0005524|GO:0016887
Vimu10g01313 387 Gene3D - 63 288 IPR027417 -
Vimu10g01313 387 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 33 384 IPR044539 -
Vimu10g01313 387 MobiDBLite consensus disorder prediction 1 18 - -
Vimu10g01313 387 SMART AAA_5 121 273 IPR003593 GO:0016887
Vimu10g01313 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 352 IPR027417 -
Vimu10g01313 387 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01313 Vimu-Chr10 13716892 13722027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01313 125 298 Calmodulin-binding Proteins AT3G56690 30.114 7.01e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01313 K22399 - gmx:100795009 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01313 10 13716892 13722027 Vimu10g01313 10 13716892 13722027 ECH