Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01311 AAGCAAAAGAAAAAAAAAATGGAATCTGGAGTTAGGTTCTACTCAGTTGATCAGTTCAAATTGGACCCCAAATGGCTGATTGATCCTAAGCATCTCTTTGTTGGGCCACAGATTGGAGAGGGAGCTCATGCTAAAGTCTATGAGGGAAAATATAAAAATCAAACTGTTGCTATTAAAATTGTGCACAAGGGAGAAACTGCAGATGATATCGCCAAGAGAGAAGGGCGTTTTGCAAGGGAGGTGGCAATGTTGTCTAGAGTGCAACATAAGAACTTGGTGAAGGTGGGAATTTGGTTTAGGCTTTCCATGATTCTTATTCTTGTGTCTGGTTTTATTGGTGCTTGTAAGGAGCCAGTAATGGTGATAGTCACTGAGCTGCTATTAGGAGGAACATTGCGTAAGTATTTGCTTAACATGCGTCCCAAATGCTTGGATAGACATGTTGCCATTGGTTTTGCACTTGATATTGCACGTGCTATGGAGTGCCTGCATTCCCATGGGATCATCCACCGTGATCTTAAACCTGATAACTTGCTGTTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAATCATTAACCGAGATGATGACCGCTGAAACAGGAACTTACCGCTGGATGGCTCCAGAGTTGTATAGTACTGTCACACTGAGGCAAGGGGAGAAAAAGCATTACAACCATAAAGTTGATGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCGTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTAGCTCTAATTCTCACTTCATGCTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACCCAAATAATCCAAATGCTCCTAAATTATCTTTACACTGTTGCACCTCCTGAACCCATGATTCCTTCAAGAATATTCAGTTCTGAGAACACTGTCTTGCCACCAGAGTCTCCCGGAACTAGCTCCTTAATGGCAAAACGTGATGATACAGGGGATACACCAAGAGCAAAGGACGAAGTCAAACCTAATGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA 1125 0.424 KQKKKKMESGVRFYSVDQFKLDPKWLIDPKHLFVGPQIGEGAHAKVYEGKYKNQTVAIKIVHKGETADDIAKREGRFAREVAMLSRVQHKNLVKVGIWFRLSMILILVSGFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDRHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKVPFEGMSNLQAAYAAAFKNVRPSAENLPEELALILTSCWQEDPNARPNFTQIIQMLLNYLYTVAPPEPMIPSRIFSSENTVLPPESPGTSSLMAKRDDTGDTPRAKDEVKPNGFLCCFSQCY 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01311 374 MobiDBLite consensus disorder prediction 332 358 - -
Vimu10g01311 374 MobiDBLite consensus disorder prediction 332 348 - -
Vimu10g01311 374 PRINTS Tyrosine kinase catalytic domain signature 162 180 IPR001245 GO:0004672|GO:0006468
Vimu10g01311 374 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Vimu10g01311 374 PRINTS Tyrosine kinase catalytic domain signature 124 137 IPR001245 GO:0004672|GO:0006468
Vimu10g01311 374 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672|GO:0006468
Vimu10g01311 374 Gene3D Phosphorylase Kinase; domain 1 20 127 - -
Vimu10g01311 374 Gene3D Transferase(Phosphotransferase) domain 1 129 317 - -
Vimu10g01311 374 Pfam Protein tyrosine and serine/threonine kinase 35 308 IPR001245 GO:0004672|GO:0006468
Vimu10g01311 374 ProSitePatterns Protein kinases ATP-binding region signature. 38 59 IPR017441 GO:0005524
Vimu10g01311 374 CDD STKc_MAP3K-like 38 308 - -
Vimu10g01311 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vimu10g01311 374 SMART serkin_6 32 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01311 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 308 - -
Vimu10g01311 374 ProSiteProfiles Protein kinase domain profile. 32 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01311 374 FunFam serine/threonine-protein kinase HT1 129 328 - -
Vimu10g01311 374 SUPERFAMILY Protein kinase-like (PK-like) 23 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01311 Vimu-Chr10 13691324 13694307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01311 15 374 MAP Kinase Kinase Kinase AT5G50180 77.778 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu10g01311 PK_Tyr_Ser-Thr 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01311 - - gmx:100796593 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01311 10 13691324 13694307 Vimu10g01311 10 13691324 13694307 ECH