Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01304 ATGGTTTCAAGCCCTAAGCCTTCAACGACGGAGGAGCGGAAAACATTCCGAGTTTCTTCCTCACGAGAACGACTCATGGAATCCAAACCCGGTCAAAATATCAAGCTCCTCTGTAGTTACGGCGGCAAAATTCGCCCACGCACCACAGACGGCGAACTCCGTTACGTCGGAGGCCACACCAGAGTTCTCACCGTCCACCGTTCGATCTCCTTTTCAGAATTGATGGTCAAACTCACTGAGTTTTGCGGTTCGTCTGTGATCTTGAAGTGTCAATTACCCAAGGGAGACTTGGAGACCCTGATTTCCATAACCAACGACGAAGATCTCGCTAACATAATCGAAGAATACGATCGTGCCTCGTTGAAACTGGCGCATCCAATGAAGATCAAAGCCGTTCTCTTGCCGCCAAGGTCGTTGAAGAAGGTTTCGTCTACTCCGACGCTGTCCTCGGCGTCGTCCAGCGCCAGTCACTCTCCGGCCAGATCGCCTCATACTTCCGCCGAGTCCCTGCCGTACGGGGCGTACCGCTACGGATGCAATTACCGGACTCCGCCGTTGCCGGCTGCGCCTGCTGCTACACGCAGTTCGATGGAAACCATAGATTGTGGCGTCGTGGACCTCACTGCTACAATTACTGCCACTGAGGCCAGCGGATTTGTTCATATAGGTTCCGTTAACCACCGTCTGACACGAGACCACGATTCCTTTGAGGCGTTACACGTGTTGCTTTTGGCGGTCGATAAAGGACGGAGACATTGTAGCGTGACTTGTGGGGATTGTGGAAAAGGACAGAAGCTTGAACCTTCTTGA 810 0.5272 MVSSPKPSTTEERKTFRVSSSRERLMESKPGQNIKLLCSYGGKIRPRTTDGELRYVGGHTRVLTVHRSISFSELMVKLTEFCGSSVILKCQLPKGDLETLISITNDEDLANIIEEYDRASLKLAHPMKIKAVLLPPRSLKKVSSTPTLSSASSSASHSPARSPHTSAESLPYGAYRYGCNYRTPPLPAAPAATRSSMETIDCGVVDLTATITATEASGFVHIGSVNHRLTRDHDSFEALHVLLLAVDKGRRHCSVTCGDCGKGQKLEPS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01304 269 SUPERFAMILY CAD & PB1 domains 50 137 - -
Vimu10g01304 269 Gene3D - 54 133 - -
Vimu10g01304 269 PANTHER OS05G0427100 PROTEIN-RELATED 25 154 - -
Vimu10g01304 269 SMART PB1_new 48 136 IPR000270 GO:0005515
Vimu10g01304 269 MobiDBLite consensus disorder prediction 144 165 - -
Vimu10g01304 269 MobiDBLite consensus disorder prediction 10 24 - -
Vimu10g01304 269 Pfam PB1 domain 50 122 IPR000270 GO:0005515
Vimu10g01304 269 CDD PB1_UP2 37 124 - -
Vimu10g01304 269 MobiDBLite consensus disorder prediction 144 167 - -
Vimu10g01304 269 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01304 Vimu-Chr10 13629328 13630734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01304 13 135 MAP Kinase Kinase Kinase AT1G04700 42.276 8.38e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01304 - - vra:106761207 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01304 10 13629328 13630734 Vimu10g01304 10 13629328 13630734 ECH
Vimu7g03640 7 31480271 31481090 Vimu10g01304 10 13629328 13630734 PCT